Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 0.0e+00 1392.5 766 100.0
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.9e-135 486.1 865 43.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.4e-60 238.8 352 40.6
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.2e-56 225.7 400 37.2
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.3e-55 222.2 419 35.6
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 3.9e-55 220.7 408 36.8
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.9e-55 220.7 401 36.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.5e-54 218.8 412 36.9
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 4.3e-54 217.2 400 35.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 7.3e-54 216.5 427 36.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.2e-53 215.7 339 39.5
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.1e-53 214.9 400 35.8
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.8e-53 214.5 342 39.2
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 4.7e-53 213.8 418 34.2
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 6.2e-53 213.4 403 36.2
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 6.2e-53 213.4 358 37.4
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 8.0e-53 213.0 406 36.2
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.1e-52 212.6 407 35.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.1e-52 212.6 348 39.7
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.4e-52 212.2 387 35.9
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.8e-52 211.8 386 36.3
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.8e-52 211.8 411 35.5
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.3e-52 211.5 406 36.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.3e-52 211.5 403 34.7
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.0e-52 210.7 417 34.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 5.2e-52 210.3 421 35.4
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 8.9e-52 209.5 339 38.6
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-51 209.1 404 35.6
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.5e-51 208.8 346 38.2
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.0e-51 208.4 339 38.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.0e-51 208.4 403 34.5
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.6e-51 208.0 406 35.7
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.4e-51 207.6 407 34.2
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 4.4e-51 207.2 403 35.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 7.5e-51 206.5 422 34.6
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 7.5e-51 206.5 408 35.8
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 9.8e-51 206.1 409 34.5
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 9.8e-51 206.1 348 38.5
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 9.8e-51 206.1 339 38.6
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.3e-50 205.7 339 38.6
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 2.2e-50 204.9 406 36.0
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.9e-50 204.5 327 39.4
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.9e-50 204.5 327 39.4
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 3.7e-50 204.1 353 38.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 4.9e-50 203.8 327 39.4
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 4.9e-50 203.8 391 35.3
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 4.9e-50 203.8 392 36.0
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 6.4e-50 203.4 389 36.2
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 6.4e-50 203.4 339 38.3
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 6.4e-50 203.4 318 38.7
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 6.4e-50 203.4 400 34.5
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 8.3e-50 203.0 400 34.8
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 8.3e-50 203.0 339 38.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 8.3e-50 203.0 339 38.6
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 8.3e-50 203.0 400 35.5
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.1e-49 202.6 327 40.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.4e-49 202.2 327 39.4
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.4e-49 202.2 399 34.1
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-49 202.2 420 34.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.9e-49 201.8 421 33.0
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 3.2e-49 201.1 327 39.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.4e-49 200.3 356 38.5
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.4e-49 200.3 364 37.1
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 5.4e-49 200.3 394 33.8
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 5.4e-49 200.3 362 35.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 7.1e-49 199.9 327 39.1
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 7.1e-49 199.9 355 38.0
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 7.1e-49 199.9 339 38.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 7.1e-49 199.9 339 37.2
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 7.1e-49 199.9 339 37.2
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 7.1e-49 199.9 327 39.4
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 9.2e-49 199.5 355 37.7
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 9.2e-49 199.5 404 35.6
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 9.2e-49 199.5 344 37.5
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.2e-48 199.1 339 37.8
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-48 198.7 421 33.3
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.1e-48 198.4 393 34.1
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.1e-48 198.4 368 35.6
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.1e-48 198.4 421 33.3
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.1e-48 198.4 339 36.6
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 2.1e-48 198.4 399 35.3
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.7e-48 198.0 346 37.9
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 2.7e-48 198.0 356 35.4
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 3.5e-48 197.6 405 35.6
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.5e-48 197.6 451 33.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 6.0e-48 196.8 412 35.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 6.0e-48 196.8 339 36.9
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 6.0e-48 196.8 340 37.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 7.8e-48 196.4 358 36.3
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-47 196.1 430 33.0
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.3e-47 195.7 327 38.5
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.3e-47 195.7 401 33.9
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.3e-47 195.7 401 34.4
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.3e-47 195.7 404 35.6
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.3e-47 194.9 415 34.7
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 3.9e-47 194.1 381 35.2
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.9e-47 194.1 417 33.3
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-47 194.1 409 34.0
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.1e-47 193.7 421 32.8
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 8.6e-47 193.0 406 34.7
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.5e-46 191.4 306 39.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 3.6e-45 187.6 339 37.8
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 4.7e-45 187.2 418 32.5
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 6.2e-45 186.8 327 37.3
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.1e-44 186.0 330 37.6
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.2e-43 182.6 352 34.4
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.4e-43 181.0 363 35.3
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.3e-42 179.1 342 36.3
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.3e-42 179.1 295 37.6
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-42 178.7 400 31.8
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 8.6e-39 166.4 316 36.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 8.6e-39 166.4 371 34.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 9.6e-38 162.9 295 36.9
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.7e-34 152.1 424 30.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-34 151.8 427 30.4
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.9e-33 148.7 348 33.6
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.2e-32 146.0 354 33.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.7e-31 142.1 165 46.7
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.1e-30 139.4 322 33.2
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.3e-30 137.9 374 29.4
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 8.1e-29 133.3 431 27.6
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.3e-28 130.6 377 31.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.7e-24 118.2 166 42.2
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.3e-22 110.2 237 34.6
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.6e-22 109.8 315 30.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 4.5e-19 100.9 228 33.3
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 8.4e-18 96.7 231 32.9
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 8.7e-15 86.7 323 30.0
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 3.3e-14 84.7 254 32.7
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 3.3e-14 84.7 254 32.7
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.3e-14 84.3 177 31.6
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.8e-12 79.0 93 44.1
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.4e-12 78.6 269 26.4
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.1e-09 69.7 193 31.1
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 9.3e-09 66.6 74 45.9
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-08 65.5 74 45.9
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 7.9e-08 63.5 115 33.0
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-06 59.7 141 30.5


User provided reference genes

Program Settings