Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.0e-246 854.7 439 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 3.0e-145 519.2 402 66.7
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-143 513.8 364 71.2
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-143 513.8 364 71.2
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.8e-143 512.7 364 70.6
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.7e-143 512.3 363 69.4
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 8.5e-140 501.1 383 66.6
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-139 500.7 361 70.4
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 4.2e-139 498.8 381 66.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 4.2e-139 498.8 413 63.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 4.2e-139 498.8 368 67.7
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 5.5e-139 498.4 377 68.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 5.5e-139 498.4 364 68.1
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 7.2e-139 498.0 364 68.7
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 7.2e-139 498.0 402 63.4
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 9.4e-139 497.7 364 68.4
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.6e-138 496.9 364 68.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.1e-138 496.5 361 69.0
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 2.7e-138 496.1 424 60.4
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.7e-138 496.1 364 68.1
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.6e-138 495.7 365 68.5
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 4.7e-138 495.4 364 68.1
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 4.7e-138 495.4 392 64.8
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 4.7e-138 495.4 364 68.4
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 4.7e-138 495.4 364 68.1
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 6.1e-138 495.0 369 68.0
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 6.1e-138 495.0 392 65.1
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 6.1e-138 495.0 392 65.1
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 6.1e-138 495.0 422 61.4
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 6.1e-138 495.0 361 68.4
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 6.1e-138 495.0 407 63.6
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 7.9e-138 494.6 364 68.1
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 7.9e-138 494.6 364 67.9
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 7.9e-138 494.6 384 66.4
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 7.9e-138 494.6 406 63.3
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.0e-137 494.2 417 60.4
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.4e-137 493.8 364 68.7
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.4e-137 493.8 421 61.3
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.8e-137 493.4 364 67.6
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.8e-137 493.4 401 64.1
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 2.3e-137 493.0 364 68.1
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.3e-137 493.0 403 64.3
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.3e-137 493.0 417 60.0
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.0e-137 492.7 361 68.4
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.9e-137 492.3 360 68.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 3.9e-137 492.3 364 67.9
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 5.1e-137 491.9 420 61.9
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.1e-137 491.9 386 64.8
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 5.1e-137 491.9 361 68.1
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 6.7e-137 491.5 423 60.0
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 8.8e-137 491.1 361 67.3
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 8.8e-137 491.1 361 68.1
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.1e-136 490.7 382 64.7
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.1e-136 490.7 361 68.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.5e-136 490.3 361 67.0
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.5e-136 490.3 361 69.0
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.0e-136 490.0 364 67.9
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.0e-136 490.0 364 66.8
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.6e-136 489.6 361 68.1
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.6e-136 489.6 385 65.5
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.6e-136 489.6 361 67.3
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.6e-136 489.6 404 62.9
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.6e-136 489.6 404 62.9
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.6e-136 489.6 361 67.3
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.3e-136 489.2 361 67.0
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.3e-136 489.2 406 62.6
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 4.4e-136 488.8 361 67.9
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 4.4e-136 488.8 423 60.5
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 5.7e-136 488.4 361 68.1
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 7.4e-136 488.0 385 65.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 7.4e-136 488.0 364 67.0
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 9.7e-136 487.6 422 61.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.8e-135 486.1 377 66.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.8e-135 486.1 361 67.3
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.7e-135 485.7 426 60.6
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 3.7e-135 485.7 392 63.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 3.7e-135 485.7 401 62.3
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.8e-135 485.3 419 60.9
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 6.3e-135 485.0 364 66.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 6.3e-135 485.0 364 66.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 6.3e-135 485.0 419 61.1
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.3e-135 485.0 364 66.8
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 6.3e-135 485.0 361 67.6
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 8.2e-135 484.6 361 68.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 8.2e-135 484.6 364 67.0
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 8.2e-135 484.6 364 67.0
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.2e-135 484.6 419 61.1
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.2e-135 484.6 419 60.9
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 8.2e-135 484.6 361 68.1
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-134 484.2 419 60.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-134 484.2 393 62.6
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.8e-134 483.4 361 67.0
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.8e-134 483.4 361 66.8
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.8e-134 483.4 389 63.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 2.4e-134 483.0 364 67.3
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 2.4e-134 483.0 420 60.5
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.4e-134 483.0 417 60.7
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.4e-134 483.0 417 60.7
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.4e-134 483.0 364 67.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.4e-134 483.0 407 62.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.1e-134 482.6 421 60.6
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.1e-134 482.6 421 60.6
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.1e-134 482.6 361 67.9
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.1e-134 482.3 361 67.3
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.1e-134 482.3 361 67.3
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 4.1e-134 482.3 361 67.0
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.1e-134 482.3 364 67.0
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.1e-134 482.3 429 59.2
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 7.0e-134 481.5 361 67.6
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 9.1e-134 481.1 420 61.2
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 9.1e-134 481.1 421 60.3
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 1.5e-133 480.3 418 61.0
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 3.5e-133 479.2 364 67.0
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 3.5e-133 479.2 364 66.8
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.9e-133 478.4 367 66.5
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 7.7e-133 478.0 361 67.3
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.0e-132 477.6 433 59.1
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.5e-131 473.8 361 66.5
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 8.0e-130 468.0 339 68.1
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.3e-128 462.6 374 64.2
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 3.3e-128 462.6 381 64.6
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.7e-127 459.1 419 59.2
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 9.4e-123 444.5 417 57.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.2e-122 444.1 438 54.8
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.2e-122 444.1 383 58.2
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.0e-121 441.0 419 57.8
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 6.8e-121 438.3 305 70.8
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.7e-119 433.7 408 55.9
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 2.2e-119 433.3 372 61.8
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.1e-118 431.0 358 58.7
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.8e-118 430.3 367 57.5
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 2.4e-118 429.9 410 55.6
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 2.7e-117 426.4 374 59.9
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.1e-115 421.0 351 58.1
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.2e-115 419.5 352 58.8
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 9.4e-115 417.9 388 56.2
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.1e-114 415.2 358 55.9
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 5.2e-113 412.1 419 54.7
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.8e-111 405.6 287 70.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 6.3e-111 405.2 358 55.3
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 5.0e-108 395.6 301 65.8
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 6.6e-108 395.2 359 54.6
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 6.6e-108 395.2 287 68.3
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.4e-102 377.5 321 60.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 6.4e-79 298.9 299 54.2
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.2e-78 296.6 363 46.0
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-73 281.6 341 44.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.8e-66 256.1 215 62.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.4e-49 200.7 186 58.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.0e-48 197.6 195 52.3
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 5.8e-48 196.1 159 64.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-43 181.4 136 69.9
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.2e-40 171.8 118 66.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.9e-32 142.9 218 41.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 7.2e-30 136.0 119 56.3
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.5e-27 127.5 107 63.6
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.7e-26 124.8 80 68.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.5e-24 118.2 81 71.6
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 5.0e-23 113.2 86 69.8
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 6.7e-20 102.8 70 68.6
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 7.7e-16 89.4 76 57.9
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 5.5e-14 83.2 85 48.2
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.3e-10 72.0 51 64.7
Pp3c4_25380 Physcomitrium patens HOM05D002468 ORTHO05D314640 2.2e-07 61.2 49 67.3


User provided reference genes

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