Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_4030 Physcomitrium patens HOM05D005354 ORTHO05D006315 1.2e-112 409.8 206 100.0
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 4.5e-83 311.6 198 81.8
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 6.3e-69 264.6 198 64.1
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 8.2e-61 237.7 198 63.1
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 1.9e-49 199.9 204 48.0
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 1.2e-48 197.2 200 47.5
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 2.1e-48 196.4 201 49.8
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 8.0e-48 194.5 200 47.5
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 8.0e-48 194.5 200 48.0
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 1.8e-47 193.4 200 46.0
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 1.8e-47 193.4 200 47.5
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 2.3e-47 193.0 200 47.5
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 2.3e-47 193.0 201 48.8
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 3.0e-47 192.6 200 47.0
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 4.0e-47 192.2 200 49.0
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 5.2e-47 191.8 200 46.0
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 8.8e-47 191.0 200 48.5
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 2.0e-46 189.9 200 46.0
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 2.6e-46 189.5 200 46.0
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 5.7e-46 188.3 200 44.5
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 5.7e-46 188.3 200 44.5
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 5.7e-46 188.3 200 47.5
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 5.7e-46 188.3 200 45.5
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 7.5e-46 188.0 200 46.0
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 7.5e-46 188.0 200 45.5
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 9.7e-46 187.6 200 47.5
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 9.7e-46 187.6 200 47.5
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.3e-45 187.2 200 44.0
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 1.7e-45 186.8 200 44.0
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 1.7e-45 186.8 200 47.0
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 2.2e-45 186.4 200 43.5
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 2.8e-45 186.0 200 46.0
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 2.8e-45 186.0 200 45.5
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.8e-45 186.0 200 45.0
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 3.7e-45 185.7 200 47.0
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.7e-45 185.7 200 47.0
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 4.8e-45 185.3 200 45.0
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.8e-45 185.3 200 47.0
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 6.3e-45 184.9 200 45.5
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 6.3e-45 184.9 200 46.0
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 8.2e-45 184.5 200 45.5
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 8.2e-45 184.5 200 46.0
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 8.2e-45 184.5 200 43.0
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 1.1e-44 184.1 200 45.0
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 1.1e-44 184.1 200 44.5
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 1.4e-44 183.7 200 45.0
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 1.4e-44 183.7 204 43.6
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 1.4e-44 183.7 200 45.5
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 1.4e-44 183.7 200 44.0
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 1.4e-44 183.7 200 46.0
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 1.4e-44 183.7 200 46.0
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 1.8e-44 183.3 200 44.5
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 1.8e-44 183.3 200 46.5
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 2.4e-44 183.0 200 45.5
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 3.1e-44 182.6 200 45.5
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 3.1e-44 182.6 200 45.5
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 3.1e-44 182.6 191 45.0
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 4.1e-44 182.2 204 43.1
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 4.1e-44 182.2 200 45.0
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.1e-44 182.2 200 46.0
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 5.3e-44 181.8 200 44.5
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 7.0e-44 181.4 196 44.9
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 9.1e-44 181.0 200 43.0
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 9.1e-44 181.0 200 46.0
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 1.6e-43 180.3 200 45.0
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 1.6e-43 180.3 200 45.0
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 1.6e-43 180.3 200 45.0
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 1.6e-43 180.3 200 44.0
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 2.0e-43 179.9 200 43.0
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 2.0e-43 179.9 200 44.0
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 2.7e-43 179.5 200 43.0
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 3.5e-43 179.1 200 42.0
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 5.9e-43 178.3 200 43.0
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 7.7e-43 177.9 200 41.5
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 7.7e-43 177.9 200 44.0
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 1.3e-42 177.2 200 43.5
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.3e-42 177.2 200 43.0
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 1.3e-42 177.2 200 43.0
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 1.7e-42 176.8 200 43.0
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 1.7e-42 176.8 200 42.5
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 1.7e-42 176.8 200 43.5
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 2.2e-42 176.4 200 42.0
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 2.2e-42 176.4 200 44.0
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 2.2e-42 176.4 200 43.0
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 2.9e-42 176.0 200 43.5
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 2.9e-42 176.0 200 42.5
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 3.8e-42 175.6 200 45.0
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 8.5e-42 174.5 200 43.0
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 1.9e-41 173.3 200 42.5
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 2.5e-41 172.9 200 41.5
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 3.2e-41 172.6 198 44.9
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 4.2e-41 172.2 200 43.5
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 4.2e-41 172.2 200 42.0
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 5.5e-41 171.8 200 43.5
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 5.5e-41 171.8 200 42.0
Migut.E01656 Erythranthe guttata HOM05D005354 ORTHO05D006315 9.4e-41 171.0 203 42.9
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 1.2e-40 170.6 227 40.1
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 1.6e-40 170.2 200 42.0
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 1.6e-40 170.2 200 42.0
AUR62044247 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.6e-40 170.2 191 44.0
AUR62042791 Chenopodium quinoa HOM05D005354 ORTHO05D006315 2.1e-40 169.9 191 44.0
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 2.7e-40 169.5 191 44.0
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 2.7e-40 169.5 200 40.5
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 8.0e-40 167.9 199 40.7
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 1.0e-39 167.5 204 43.1
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 1.4e-39 167.2 201 41.8
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 3.0e-39 166.0 200 40.0
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 5.2e-39 165.2 224 39.7
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 8.8e-39 164.5 244 38.9
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 8.8e-39 164.5 200 41.0
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 7.5e-38 161.4 172 45.9
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 7.5e-38 161.4 200 39.5
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 1.2e-35 154.1 199 42.2
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 3.5e-35 152.5 228 36.8
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 5.5e-33 145.2 204 36.3
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 1.3e-29 134.0 200 39.0
HPP92_015107 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.6e-22 109.8 125 44.0
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 4.9e-21 105.5 198 31.8
unitig_8.g3912 Utricularia gibba HOM05D005354 ORTHO05D006315 6.6e-18 95.1 102 48.0
CDE12G0753 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 7.3e-17 91.7 105 45.7
Lsat_1_v5_gn_5_20860 Lactuca sativa HOM05D005354 ORTHO05D006315 1.1e-15 87.8 128 36.7
Zm00001eb442460 Zea mays HOM05D005354 ORTHO05D006315 3.1e-15 86.3 154 35.1
MCO16G272 Micromonas commoda HOM05D005354 ORTHO05D006315 2.0e-14 83.6 190 28.4
HPP92_015035 Vanilla planifolia HOM05D005354 ORTHO05D006315 9.8e-14 81.3 175 34.9
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 7.8e-11 71.6 69 40.6
SEGI_16043 Sequoiadendron giganteum HOM05D005354 ORTHO05D006315 3.0e-10 69.7 61 49.2


User provided reference genes

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