Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.9e-48 194.9 98 100.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.3e-27 126.3 95 68.4
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 6.3e-27 124.0 98 64.3
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 7.2e-23 110.5 85 65.9
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 9.4e-23 110.2 88 62.5
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.1e-22 109.0 85 65.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 2.7e-22 108.6 85 64.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.6e-22 108.2 85 64.7
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 4.7e-22 107.8 88 60.2
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 6.1e-22 107.5 91 59.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.0e-21 106.7 85 63.5
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.8e-21 105.9 85 63.5
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.8e-21 105.9 85 63.5
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 1.8e-21 105.9 85 63.5
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 4.0e-21 104.8 94 56.4
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.2e-21 104.4 85 62.4
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.2e-21 104.4 85 62.4
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 5.2e-21 104.4 85 62.4
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.2e-21 104.4 85 62.4
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.8e-21 103.6 85 61.2
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 8.8e-21 103.6 89 59.6
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 1.5e-20 102.8 85 61.2
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.5e-20 102.8 89 58.4
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.0e-20 102.4 85 60.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.6e-20 102.1 87 57.5
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.6e-20 102.1 87 57.5
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 3.3e-20 101.7 89 55.1
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 3.3e-20 101.7 85 61.2
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 4.4e-20 101.3 89 58.4
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.4e-20 101.3 89 58.4
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.4e-20 101.3 89 58.4
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.4e-20 101.3 89 58.4
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.4e-20 101.3 89 58.4
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 4.4e-20 101.3 94 55.3
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 4.4e-20 101.3 94 55.3
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 4.4e-20 101.3 89 58.4
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 4.4e-20 101.3 94 56.4
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 5.7e-20 100.9 88 56.8
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.7e-20 100.9 87 58.6
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 5.7e-20 100.9 92 56.5
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.7e-20 100.9 84 60.7
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 7.4e-20 100.5 87 58.6
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 9.7e-20 100.1 84 59.5
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 9.7e-20 100.1 84 61.9
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 9.7e-20 100.1 87 57.5
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 9.7e-20 100.1 89 57.3
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 9.7e-20 100.1 94 55.3
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 9.7e-20 100.1 88 60.2
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 9.7e-20 100.1 90 60.0
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.3e-19 99.8 86 61.6
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.3e-19 99.8 86 61.6
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.3e-19 99.8 86 61.6
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.3e-19 99.8 86 61.6
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.3e-19 99.8 87 57.5
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.3e-19 99.8 92 54.3
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.3e-19 99.8 85 61.2
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.3e-19 99.8 89 57.3
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.7e-19 99.4 89 53.9
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.7e-19 99.4 87 58.6
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.2e-19 99.0 88 56.8
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 2.2e-19 99.0 90 58.9
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.2e-19 99.0 87 57.5
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.2e-19 99.0 89 57.3
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.2e-19 99.0 92 55.4
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.2e-19 99.0 87 55.2
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.8e-19 98.6 86 55.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 2.8e-19 98.6 85 60.0
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.8e-19 98.6 89 56.2
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.3e-19 97.4 87 57.5
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 6.3e-19 97.4 89 55.1
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 6.3e-19 97.4 88 54.5
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 6.3e-19 97.4 85 58.8
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 6.3e-19 97.4 89 56.2
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 8.2e-19 97.1 94 55.3
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.2e-19 97.1 87 56.3
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 8.2e-19 97.1 85 57.6
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 8.2e-19 97.1 92 54.3
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.1e-18 96.7 88 56.8
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.1e-18 96.7 89 53.9
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.1e-18 96.7 87 54.0
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.1e-18 96.7 87 54.0
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.4e-18 96.3 90 54.4
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.4e-18 96.3 90 55.6
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.4e-18 96.3 89 52.8
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.4e-18 96.3 89 53.9
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.8e-18 95.9 92 53.3
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.8e-18 95.9 89 52.8
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.8e-18 95.9 90 57.8
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.8e-18 95.9 87 57.5
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.8e-18 95.9 87 57.5
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.8e-18 95.9 85 55.3
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.8e-18 95.9 87 55.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.8e-18 95.9 87 57.5
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.8e-18 95.9 84 57.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 2.4e-18 95.5 98 51.0
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 2.4e-18 95.5 89 57.3
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 2.4e-18 95.5 89 53.9
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.4e-18 95.5 89 53.9
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.4e-18 95.5 89 53.9
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 2.4e-18 95.5 89 53.9
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 2.4e-18 95.5 90 57.8
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.4e-18 95.5 90 53.3
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.4e-18 95.5 85 56.5
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 3.1e-18 95.1 89 52.8
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 3.1e-18 95.1 87 54.0
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 4.1e-18 94.7 89 55.1
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.1e-18 94.7 87 55.2
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 4.1e-18 94.7 95 53.7
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 4.1e-18 94.7 89 56.2
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 4.1e-18 94.7 87 56.3
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 4.1e-18 94.7 87 57.5
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 5.3e-18 94.4 89 52.8
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.3e-18 94.4 90 54.4
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 7.0e-18 94.0 92 53.3
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 7.0e-18 94.0 89 56.2
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.0e-18 94.0 90 54.4
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 7.0e-18 94.0 85 56.5
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 7.0e-18 94.0 90 54.4
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 7.0e-18 94.0 90 52.2
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 9.1e-18 93.6 88 53.4
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 9.1e-18 93.6 86 55.8
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 9.1e-18 93.6 87 54.0
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 9.1e-18 93.6 90 54.4
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 9.1e-18 93.6 89 56.2
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 9.1e-18 93.6 89 56.2
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 9.1e-18 93.6 87 52.9
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.2e-17 93.2 81 61.7
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.2e-17 93.2 87 55.2
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.6e-17 92.8 87 52.9
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.6e-17 92.8 89 53.9
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.0e-17 92.4 90 54.4
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.6e-17 92.0 86 53.5
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 4.5e-17 91.3 89 53.9
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 7.7e-17 90.5 87 52.9
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 7.7e-17 90.5 89 51.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.0e-16 90.1 85 49.4
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.0e-16 90.1 85 49.4
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.3e-16 89.7 92 51.1
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.9e-16 88.6 88 51.1
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.2e-15 84.0 87 51.7
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.6e-14 82.8 65 64.6
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 2.1e-14 82.4 84 53.6
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 6.1e-14 80.9 86 51.2
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.0e-13 78.6 82 51.2
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 4.0e-13 78.2 82 54.9
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-12 76.3 82 53.7
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.3e-11 70.9 83 45.8
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 8.3e-11 70.5 81 48.1
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 8.5e-08 60.5 46 58.7
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 5.5e-07 57.8 44 56.8
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 5.5e-07 57.8 92 41.3
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 5.5e-07 57.8 48 56.2
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.6e-06 56.2 84 38.1
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.6e-06 55.1 44 56.8
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 6.1e-06 54.3 53 50.9


User provided reference genes

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