Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.0e-168 595.1 301 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 6.0e-52 208.8 169 59.2
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.0e-52 208.8 162 60.5
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.3e-51 207.6 264 44.3
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 7.3e-50 201.8 234 51.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.6e-49 200.7 250 48.0
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.6e-49 199.5 195 56.9
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 6.2e-49 198.7 200 55.0
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.4e-48 197.6 196 56.6
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.4e-48 197.6 199 55.3
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 4.0e-48 196.1 232 50.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.0e-48 196.1 196 56.1
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 6.8e-48 195.3 202 55.0
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 8.9e-48 194.9 228 51.8
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.5e-47 194.1 194 54.6
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.5e-47 194.1 202 54.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.6e-47 193.4 200 54.0
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.6e-47 193.4 194 56.7
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.6e-47 193.4 213 52.6
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 4.4e-47 192.6 203 55.2
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 4.4e-47 192.6 204 55.9
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.4e-47 192.6 195 54.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.4e-47 192.6 199 57.3
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.8e-47 192.2 205 52.7
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 5.8e-47 192.2 226 51.3
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.9e-47 191.4 205 52.7
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.9e-47 191.4 201 54.2
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.3e-46 191.0 201 53.7
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.3e-46 191.0 201 53.7
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.7e-46 190.7 204 52.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.7e-46 190.7 191 55.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.2e-46 190.3 193 53.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 2.9e-46 189.9 196 51.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 3.7e-46 189.5 199 54.3
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.7e-46 189.5 197 53.8
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.9e-46 189.1 196 53.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.9e-46 189.1 194 54.1
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 4.9e-46 189.1 205 52.2
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 6.4e-46 188.7 206 51.5
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 8.3e-46 188.3 215 50.7
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 8.3e-46 188.3 244 47.1
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 8.3e-46 188.3 195 52.3
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.1e-45 188.0 204 51.0
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.1e-45 188.0 199 52.3
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.4e-45 187.6 198 53.0
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.4e-45 187.6 205 51.7
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.9e-45 187.2 199 53.3
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.9e-45 187.2 205 51.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.4e-45 186.8 211 50.2
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.2e-45 186.4 209 54.5
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.2e-45 186.4 186 53.2
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 3.2e-45 186.4 186 53.2
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 4.1e-45 186.0 200 52.5
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 4.1e-45 186.0 202 51.5
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 5.4e-45 185.7 222 48.2
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.4e-45 185.7 198 53.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 9.2e-45 184.9 195 52.3
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.2e-44 184.5 194 51.0
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.2e-44 184.5 223 49.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.1e-44 183.7 165 57.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 3.5e-44 183.0 235 46.8
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 3.5e-44 183.0 197 51.8
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 6.0e-44 182.2 246 45.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 6.0e-44 182.2 199 53.3
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 7.8e-44 181.8 203 51.7
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.0e-43 181.4 209 50.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.0e-43 181.4 253 45.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.7e-43 180.6 225 46.2
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.7e-43 180.6 200 51.5
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.7e-43 180.6 209 51.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.7e-43 180.6 209 51.2
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.7e-43 180.6 254 43.3
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.3e-43 180.3 205 48.8
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 3.9e-43 179.5 195 49.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.1e-43 179.1 206 48.1
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 6.6e-43 178.7 215 49.3
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.1e-42 177.9 187 54.5
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-42 177.9 190 53.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.1e-42 177.9 195 51.8
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.1e-42 177.9 209 47.8
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.5e-42 176.8 198 51.0
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.3e-42 176.4 204 49.5
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 3.3e-42 176.4 225 47.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 5.6e-42 175.6 210 49.0
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 9.5e-42 174.9 230 46.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.6e-41 174.1 206 48.5
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.6e-41 174.1 208 47.6
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.1e-41 173.7 198 50.5
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 2.1e-41 173.7 197 49.7
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.6e-41 172.9 198 51.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.7e-41 172.6 214 48.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 8.1e-41 171.8 239 45.6
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.1e-40 171.4 239 45.2
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 4.0e-40 169.5 228 46.9
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 5.2e-40 169.1 148 57.4
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.2e-39 167.9 209 47.4
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.2e-39 167.9 145 56.6
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.6e-39 166.8 193 48.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.6e-39 166.8 180 49.4
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 2.6e-39 166.8 220 47.7
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.6e-39 166.8 195 47.7
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.4e-39 166.4 149 53.0
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 3.4e-39 166.4 149 53.0
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 4.4e-39 166.0 249 44.6
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 7.6e-39 165.2 218 45.4
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 7.6e-39 165.2 178 50.6
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.2e-38 163.7 155 52.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 8.4e-38 161.8 195 47.2
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.1e-37 161.4 224 44.2
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.1e-37 161.4 110 70.9
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.4e-37 160.2 194 46.4
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.4e-37 160.2 194 46.4
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 4.2e-37 159.5 149 50.3
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 7.1e-37 158.7 194 46.4
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 7.1e-37 158.7 194 46.4
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 7.1e-37 158.7 156 50.0
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.7e-36 156.8 175 54.9
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 3.5e-36 156.4 196 44.4
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.6e-36 156.0 196 44.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.0e-35 154.8 195 46.2
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.0e-35 154.8 194 46.4
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-35 154.1 197 45.2
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.3e-35 153.7 244 42.6
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 8.7e-35 151.8 177 51.4
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 2.5e-34 150.2 205 43.4
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.6e-33 147.5 171 51.5
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.6e-33 146.4 216 42.6
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.2e-33 145.6 185 44.3
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.8e-32 144.1 180 46.7
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.6e-31 140.2 187 44.9
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.4e-31 139.8 177 50.8
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.9e-29 134.0 205 39.5
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.2e-29 132.9 190 45.3
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.2e-28 131.3 187 44.9
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.2e-28 131.3 198 42.9
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.1e-28 130.6 166 43.4
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 5.1e-27 125.9 142 45.8
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.5e-26 123.6 172 43.6
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.8e-25 120.2 118 54.2
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.5e-23 112.8 72 65.3
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.7e-20 103.6 132 52.3
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 4.6e-20 102.8 294 31.3
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 3.9e-19 99.8 133 51.1
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 9.6e-18 95.1 158 38.6
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-16 91.7 133 51.1
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 3.1e-16 90.1 131 45.8
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 6.9e-16 89.0 59 62.7
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-15 87.8 59 57.6
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.7e-14 84.3 160 40.0
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 1.7e-14 84.3 135 45.2
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 2.9e-14 83.6 156 41.7
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.9e-14 82.8 131 42.7
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 8.4e-14 82.0 58 56.9
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-13 81.6 131 44.3
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 4.2e-13 79.7 90 42.2
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.6e-12 77.8 88 51.1
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.6e-12 77.8 96 55.2
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.1e-12 77.4 131 48.1
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 6.0e-12 75.9 109 37.6
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.8e-11 74.3 95 47.4
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.5e-10 70.5 187 35.3
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.8e-08 64.3 93 52.7
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.5e-07 61.2 98 44.9
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 8.4e-06 55.5 67 37.3


User provided reference genes

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