Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.0e-279 966.1 486 100.0
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 6.3e-144 515.0 481 57.2
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 4.4e-137 492.3 505 54.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 7.2e-132 474.9 432 57.2
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 4.0e-122 442.6 470 52.1
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 6.8e-122 441.8 479 49.1
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.2e-121 441.0 451 51.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.5e-121 440.7 466 50.0
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 4.4e-121 439.1 453 50.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.7e-121 438.7 460 50.9
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 3.7e-120 436.0 459 51.9
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 6.3e-120 435.3 460 50.0
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.3e-120 435.3 453 50.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.4e-119 434.1 496 50.8
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.4e-119 434.1 478 50.0
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.8e-119 433.7 467 51.0
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 5.4e-119 432.2 457 50.3
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 5.4e-119 432.2 455 50.8
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 7.0e-119 431.8 470 50.2
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.7e-118 429.9 470 50.0
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.7e-118 429.9 466 50.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.7e-118 429.9 458 50.9
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.7e-117 427.2 468 50.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.3e-117 426.8 468 49.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.9e-117 426.4 470 48.7
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 5.0e-117 425.6 468 50.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 6.5e-117 425.2 468 50.2
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.1e-116 424.5 472 48.7
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.9e-116 423.7 448 51.1
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 2.5e-116 423.3 448 51.6
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.2e-116 422.9 488 50.0
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.2e-116 422.9 451 51.4
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.5e-116 422.2 462 49.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 7.2e-116 421.8 465 48.4
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.2e-115 421.0 462 49.1
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.6e-115 420.6 467 48.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.6e-115 420.6 462 49.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.8e-115 419.9 468 48.5
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.8e-115 419.9 480 47.9
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.1e-115 418.7 463 49.7
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 6.1e-115 418.7 457 49.9
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 8.0e-115 418.3 452 50.2
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.0e-114 417.9 445 50.6
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.8e-114 417.2 444 51.8
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-114 416.8 457 49.5
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 3.0e-114 416.4 485 46.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 3.0e-114 416.4 455 49.0
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 4.0e-114 416.0 465 48.6
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.2e-114 415.6 467 48.0
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 5.2e-114 415.6 467 48.0
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 6.8e-114 415.2 472 47.2
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 6.8e-114 415.2 470 48.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 8.8e-114 414.8 469 47.3
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 8.8e-114 414.8 465 47.7
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 8.8e-114 414.8 472 47.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.2e-113 414.5 484 47.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.2e-113 414.5 452 50.4
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.5e-113 414.1 472 47.0
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.5e-113 414.1 472 47.0
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.5e-113 414.1 463 49.5
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 2.6e-113 413.3 495 47.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.4e-113 412.5 494 48.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 5.7e-113 412.1 470 48.7
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 5.7e-113 412.1 467 47.8
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.5e-113 411.8 462 49.4
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 7.5e-113 411.8 446 49.8
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 9.8e-113 411.4 495 45.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 9.8e-113 411.4 450 50.0
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.3e-112 411.0 477 49.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.3e-112 411.0 470 47.4
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-112 410.6 489 47.2
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.7e-112 410.6 453 48.8
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-112 410.6 471 48.8
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.2e-112 410.2 489 47.4
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.2e-112 410.2 469 47.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 3.7e-112 409.5 470 48.7
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 4.9e-112 409.1 470 46.8
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 4.9e-112 409.1 435 51.5
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 6.3e-112 408.7 492 47.0
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 6.3e-112 408.7 534 44.4
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.1e-111 407.9 468 46.8
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.4e-111 407.5 442 49.3
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.8e-111 407.1 459 49.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.8e-111 407.1 462 48.7
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.8e-111 407.1 469 47.1
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.2e-110 404.4 470 47.0
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.6e-110 404.1 446 50.0
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.6e-110 404.1 447 49.2
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.5e-110 402.5 469 48.4
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 7.8e-110 401.7 497 45.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.9e-109 399.8 462 47.4
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 5.0e-109 399.1 456 46.9
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.5e-108 396.7 446 49.8
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.6e-108 395.6 455 48.1
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.6e-108 395.6 455 48.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.2e-107 394.4 444 49.1
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.6e-107 392.9 457 48.8
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 4.7e-107 392.5 450 48.9
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.4e-106 391.0 425 51.1
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.4e-105 386.0 455 47.7
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.0e-102 377.1 431 46.9
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-101 374.4 436 48.9
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.3e-101 374.4 455 47.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.6e-100 369.0 479 44.9
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.2e-99 367.9 557 39.3
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 6.2e-99 365.5 530 41.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.9e-95 354.0 359 52.1
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 4.0e-90 336.3 432 45.6
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.3e-88 331.3 474 42.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 7.1e-87 325.5 365 49.9
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 8.6e-85 318.5 413 45.5
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 4.0e-82 309.7 381 47.5
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.9e-80 303.5 431 40.8
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.1e-79 301.6 459 41.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 9.2e-79 298.5 463 38.4
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.0e-69 266.9 336 46.7
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 4.5e-65 253.1 363 41.9
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.4e-64 249.2 280 45.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 8.7e-61 238.8 325 43.7
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-56 223.8 308 43.5
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.4e-55 221.5 512 31.4
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-55 221.1 384 38.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.3e-55 218.8 500 32.8
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.0e-48 198.7 208 50.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.4e-42 178.3 243 46.5
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.3e-40 171.8 381 35.2
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.5e-36 157.5 463 30.2
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-33 148.7 180 47.8
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 4.2e-31 140.2 221 38.5
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 7.2e-31 139.4 178 43.3
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 7.9e-30 136.0 259 34.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-22 112.1 111 53.2
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.6e-22 111.7 93 55.9
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.4e-10 72.0 86 51.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 3.1e-10 70.9 86 48.8


User provided reference genes

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