Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 2.8e-132 475.3 246 100.0
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 1.0e-78 297.4 225 61.3
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 9.8e-77 290.8 220 64.1
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 1.4e-70 270.4 212 59.9
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 1.4e-70 270.4 211 60.2
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 5.2e-70 268.5 229 56.3
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 8.8e-70 267.7 229 57.2
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.6e-69 266.2 209 59.3
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 2.6e-69 266.2 210 59.0
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 2.6e-69 266.2 229 55.9
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 3.4e-69 265.8 209 59.8
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 5.7e-69 265.0 208 58.2
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 7.5e-69 264.6 212 58.5
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 9.8e-69 264.2 212 56.6
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.3e-68 263.8 210 60.0
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 1.3e-68 263.8 220 55.9
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.7e-68 263.5 216 58.8
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 2.2e-68 263.1 212 58.0
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 2.2e-68 263.1 206 58.7
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.2e-68 263.1 206 58.7
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.2e-68 263.1 206 58.7
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.8e-68 262.7 225 54.2
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 3.7e-68 262.3 212 56.1
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 4.9e-68 261.9 212 58.0
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 6.3e-68 261.5 236 55.9
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 6.3e-68 261.5 209 57.4
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 8.3e-68 261.2 206 58.3
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 8.3e-68 261.2 212 56.6
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 8.3e-68 261.2 212 57.5
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.1e-67 260.8 212 57.1
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.1e-67 260.8 212 56.6
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.8e-67 260.0 210 58.6
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 1.8e-67 260.0 212 57.5
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.8e-67 260.0 206 58.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 1.8e-67 260.0 209 57.4
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.1e-67 259.2 243 52.3
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 5.4e-67 258.5 220 55.5
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 7.0e-67 258.1 224 54.5
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 7.0e-67 258.1 212 56.1
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 9.2e-67 257.7 225 52.9
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 9.2e-67 257.7 227 55.5
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-66 257.3 209 56.9
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.2e-66 257.3 212 57.1
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.6e-66 256.9 209 56.0
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.6e-66 256.9 211 56.4
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 2.7e-66 256.1 209 56.9
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 3.5e-66 255.8 210 56.7
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 3.5e-66 255.8 215 56.7
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 4.5e-66 255.4 211 55.9
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.5e-66 255.4 211 56.4
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 7.7e-66 254.6 211 55.9
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.0e-65 254.2 219 53.9
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.0e-65 254.2 212 57.5
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 1.3e-65 253.8 211 55.9
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.3e-65 253.8 212 56.6
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 1.7e-65 253.4 223 53.4
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 1.7e-65 253.4 209 56.0
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.7e-65 253.4 230 52.2
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 2.3e-65 253.1 211 55.5
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.3e-65 253.1 212 55.2
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 2.9e-65 252.7 211 55.9
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 2.9e-65 252.7 222 54.1
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 3.8e-65 252.3 215 56.3
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 3.8e-65 252.3 226 52.2
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 5.0e-65 251.9 223 55.2
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 5.0e-65 251.9 197 58.4
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 8.6e-65 251.1 225 52.9
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 8.6e-65 251.1 213 55.4
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 8.6e-65 251.1 250 50.4
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 1.1e-64 250.8 212 55.7
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 1.5e-64 250.4 238 51.3
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 1.5e-64 250.4 220 54.5
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 1.5e-64 250.4 220 54.5
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.5e-64 250.4 251 49.4
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.5e-64 250.4 209 55.5
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 2.5e-64 249.6 212 54.7
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 3.3e-64 249.2 211 55.0
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 7.3e-64 248.1 212 54.7
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 7.3e-64 248.1 209 55.0
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 7.3e-64 248.1 209 56.5
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 9.5e-64 247.7 241 50.2
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 1.2e-63 247.3 209 55.0
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.2e-63 247.3 209 54.5
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.6e-63 246.9 206 56.8
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 1.6e-63 246.9 219 53.0
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 1.6e-63 246.9 250 50.0
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.1e-63 246.5 213 56.8
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.8e-63 246.1 232 52.6
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 2.8e-63 246.1 242 50.4
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 3.6e-63 245.7 212 54.7
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 3.6e-63 245.7 212 53.8
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 3.6e-63 245.7 235 48.5
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 1.4e-62 243.8 233 51.5
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 1.4e-62 243.8 207 55.1
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 5.2e-62 241.9 210 53.8
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 5.2e-62 241.9 209 54.1
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 6.8e-62 241.5 226 51.3
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 6.8e-62 241.5 232 51.7
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 1.2e-61 240.7 209 52.2
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.4e-61 239.2 221 52.5
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 5.7e-61 238.4 190 57.9
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 7.5e-61 238.0 248 47.6
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 9.8e-61 237.7 204 55.9
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 6.4e-60 235.0 219 51.6
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.8e-59 233.4 225 51.1
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 3.2e-59 232.6 192 58.3
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 9.2e-59 231.1 222 51.4
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 9.2e-59 231.1 191 57.1
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.2e-58 230.7 210 51.0
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.2e-58 230.7 254 46.9
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 2.8e-55 219.5 217 50.2
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 2.8e-55 219.5 217 51.6
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.8e-54 216.9 184 54.3
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 7.5e-53 211.5 167 58.7
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.3e-52 210.7 163 61.3
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 2.2e-52 209.9 225 46.7
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 3.3e-48 196.1 171 53.8
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 5.8e-45 185.3 218 48.2
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 6.4e-44 181.8 199 44.2
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.1e-43 181.0 203 46.8
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.8e-38 163.7 234 41.5
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 4.9e-36 155.6 217 40.6
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 5.6e-32 142.1 130 53.1
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 1.6e-31 140.6 150 44.0
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.4e-29 132.5 110 55.5
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 3.8e-28 129.4 145 46.9
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.3e-25 120.9 149 45.0
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 3.3e-24 116.3 86 55.8
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.8e-23 113.2 86 54.7
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 5.8e-21 105.5 106 48.1
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.9e-19 100.5 81 53.1
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 2.4e-19 100.1 68 58.8
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 3.2e-19 99.8 194 30.9
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 3.8e-12 76.3 64 56.2
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 6.4e-12 75.5 46 63.0
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 7.9e-10 68.6 50 58.0
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 2.8e-07 60.1 46 63.0
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.7e-07 59.7 43 60.5
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 2.4e-06 57.0 37 64.9
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 9.0e-06 55.1 35 65.7


User provided reference genes

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