Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.1e-61 240.4 179 100.0
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.9e-56 221.1 179 96.1
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 4.8e-25 118.6 64 81.2
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 6.3e-25 118.2 64 81.2
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 9.1e-24 114.4 65 75.4
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.0e-23 113.2 65 76.9
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 2.0e-23 113.2 64 76.6
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.6e-23 112.8 64 76.6
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.6e-23 112.8 64 75.0
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.5e-23 112.5 65 73.8
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 4.5e-23 112.1 65 75.4
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 5.9e-23 111.7 65 73.8
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 5.9e-23 111.7 65 73.8
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 5.9e-23 111.7 65 75.4
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 7.7e-23 111.3 64 73.4
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.0e-22 110.9 65 76.9
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.0e-22 110.9 65 76.9
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.3e-22 110.5 64 75.0
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 1.3e-22 110.5 65 76.9
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.3e-22 110.5 65 73.8
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.3e-22 110.5 65 73.8
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.7e-22 110.2 64 73.4
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 1.7e-22 110.2 65 73.8
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-22 110.2 65 73.8
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-22 110.2 65 73.8
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.7e-22 110.2 65 73.8
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 1.7e-22 110.2 65 73.8
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.7e-22 110.2 64 76.6
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 2.2e-22 109.8 63 76.2
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 2.2e-22 109.8 64 73.4
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.2e-22 109.8 65 73.8
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 2.9e-22 109.4 65 73.8
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 2.9e-22 109.4 65 73.8
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 2.9e-22 109.4 65 73.8
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.9e-22 109.4 65 73.8
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.9e-22 109.4 65 75.4
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 3.8e-22 109.0 65 72.3
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 3.8e-22 109.0 64 73.4
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 3.8e-22 109.0 65 72.3
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 3.8e-22 109.0 64 75.0
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 5.0e-22 108.6 64 73.4
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 6.5e-22 108.2 65 70.8
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 6.5e-22 108.2 65 70.8
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 6.5e-22 108.2 64 73.4
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 6.5e-22 108.2 64 71.9
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 6.5e-22 108.2 64 73.4
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 6.5e-22 108.2 64 71.9
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 8.5e-22 107.8 65 72.3
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 8.5e-22 107.8 63 73.0
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 8.5e-22 107.8 64 73.4
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 8.5e-22 107.8 65 73.8
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 8.5e-22 107.8 64 70.3
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 1.1e-21 107.5 64 73.4
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 1.1e-21 107.5 64 71.9
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.1e-21 107.5 65 73.8
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.1e-21 107.5 65 73.8
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 1.1e-21 107.5 64 73.4
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.5e-21 107.1 64 71.9
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.5e-21 107.1 64 73.4
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.5e-21 107.1 65 73.8
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.9e-21 106.7 64 71.9
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.9e-21 106.7 64 70.3
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.9e-21 106.7 64 73.4
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.9e-21 106.7 64 71.9
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 2.5e-21 106.3 64 71.9
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 2.5e-21 106.3 64 71.9
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 2.5e-21 106.3 64 73.4
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 2.5e-21 106.3 64 70.3
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 2.5e-21 106.3 64 70.3
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 3.2e-21 105.9 64 73.4
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 3.2e-21 105.9 64 73.4
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.2e-21 105.9 64 70.3
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 3.2e-21 105.9 64 68.8
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 4.2e-21 105.5 64 70.3
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 5.5e-21 105.1 64 71.9
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 5.5e-21 105.1 64 70.3
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 5.5e-21 105.1 65 69.2
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 7.2e-21 104.8 64 70.3
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 7.2e-21 104.8 64 68.8
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 9.4e-21 104.4 64 71.9
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 9.4e-21 104.4 64 71.9
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 9.4e-21 104.4 65 70.8
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 9.4e-21 104.4 65 70.8
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 9.4e-21 104.4 55 74.5
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 9.4e-21 104.4 63 69.8
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 9.4e-21 104.4 65 69.2
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.2e-20 104.0 64 70.3
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 1.2e-20 104.0 64 70.3
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.2e-20 104.0 64 67.2
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 1.2e-20 104.0 64 71.9
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.6e-20 103.6 64 68.8
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-20 103.6 64 68.8
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-20 103.6 64 68.8
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.6e-20 103.6 65 70.8
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.6e-20 103.6 64 70.3
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.1e-20 103.2 64 70.3
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 2.1e-20 103.2 64 70.3
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.1e-20 103.2 64 68.8
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 2.7e-20 102.8 64 67.2
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 2.7e-20 102.8 62 69.4
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.6e-20 102.4 64 67.2
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 3.6e-20 102.4 65 69.2
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 4.7e-20 102.1 65 66.2
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 4.7e-20 102.1 64 65.6
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.7e-20 102.1 64 65.6
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 6.1e-20 101.7 65 64.6
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 8.0e-20 101.3 64 67.2
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.4e-19 100.5 65 69.2
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.8e-19 100.1 65 64.6
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.8e-19 100.1 64 67.2
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 3.0e-19 99.4 64 67.2
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.0e-19 99.4 64 65.6
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.0e-19 99.4 55 72.7
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 4.0e-19 99.0 64 64.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.2e-19 98.6 65 64.6
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 5.2e-19 98.6 64 67.2
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 5.2e-19 98.6 64 67.2
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-18 97.4 56 73.2
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-18 97.4 92 53.3
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.2e-18 97.4 92 53.3
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.2e-18 97.4 63 65.1
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 1.2e-18 97.4 65 66.2
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.5e-18 97.1 60 68.3
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.5e-18 97.1 56 71.4
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.5e-18 97.1 56 71.4
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-18 97.1 64 64.1
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.5e-18 97.1 53 71.7
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.0e-18 96.7 64 62.5
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 2.0e-18 96.7 63 65.1
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 2.0e-18 96.7 63 65.1
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 2.0e-18 96.7 64 64.1
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 2.6e-18 96.3 56 71.4
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 2.6e-18 96.3 56 71.4
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 2.6e-18 96.3 65 61.5
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.6e-18 96.3 64 65.6
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.6e-18 96.3 55 70.9
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 2.6e-18 96.3 64 64.1
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.4e-18 95.9 56 71.4
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 4.4e-18 95.5 63 65.1
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 4.4e-18 95.5 62 64.5
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 4.4e-18 95.5 55 67.3
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 5.7e-18 95.1 64 65.6
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 7.5e-18 94.7 56 69.6
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.7e-17 93.6 56 71.4
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 1.7e-17 93.6 88 52.3
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.2e-17 93.2 53 73.6
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.2e-17 93.2 64 57.8
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.8e-17 92.8 64 59.4
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 3.7e-17 92.4 64 59.4
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 3.7e-17 92.4 64 60.9
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 4.8e-17 92.0 54 66.7
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.8e-16 90.1 55 63.6
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 5.4e-16 88.6 63 60.3
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 9.1e-16 87.8 59 61.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-15 87.0 53 66.0
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.6e-15 87.0 93 48.4
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.3e-14 84.0 49 69.4
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 2.2e-14 83.2 65 56.9
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.2e-14 83.2 55 60.0
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 3.8e-14 82.4 64 56.2
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 6.5e-14 81.6 52 65.4
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 8.5e-14 81.3 52 65.4
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.5e-13 80.5 43 76.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.5e-13 78.6 64 54.7
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.2e-13 78.2 64 53.1
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.6e-12 77.0 41 75.6
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.1e-12 76.6 64 51.6
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.7e-09 67.0 51 56.9
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.9e-09 65.5 42 66.7
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.9e-09 65.5 42 66.7
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 7.7e-07 58.2 30 66.7
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.0e-06 57.8 65 47.7
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.3e-06 57.4 65 47.7
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 1.7e-06 57.0 65 46.2


User provided reference genes

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