Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.5e-45 183.3 95 100.0
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.4e-15 86.3 97 55.7
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.1e-15 85.1 93 58.1
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 4.1e-15 84.7 97 54.6
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.0e-15 84.0 97 54.6
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-14 83.2 93 57.0
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.2e-14 83.2 97 55.7
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.6e-14 82.8 97 54.6
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.6e-14 82.8 97 54.6
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 3.5e-14 81.6 97 54.6
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 5.9e-14 80.9 97 54.6
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 5.9e-14 80.9 97 54.6
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 5.9e-14 80.9 97 54.6
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 5.9e-14 80.9 97 54.6
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 5.9e-14 80.9 97 54.6
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 5.9e-14 80.9 97 54.6
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 5.9e-14 80.9 97 53.6
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.9e-14 80.9 93 54.8
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 54.6
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 54.6
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 7.7e-14 80.5 93 54.8
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 54.6
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 54.6
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 53.6
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 53.6
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 54.6
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.7e-14 80.5 97 54.6
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.0e-13 80.1 97 53.6
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 1.0e-13 80.1 97 53.6
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.0e-13 80.1 90 56.7
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.0e-13 80.1 97 53.6
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.0e-13 80.1 97 53.6
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.3e-13 79.7 97 53.6
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.3e-13 79.7 97 53.6
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.3e-13 79.7 97 53.6
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.3e-13 79.7 97 53.6
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.3e-13 79.7 97 53.6
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.3e-13 79.7 97 53.6
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.3e-13 79.7 94 54.3
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.7e-13 79.3 97 52.6
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.7e-13 79.3 98 53.1
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.3e-13 79.0 97 53.6
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.3e-13 79.0 94 54.3
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 2.3e-13 79.0 97 52.6
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 2.9e-13 78.6 100 51.0
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.9e-13 78.6 97 53.6
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.9e-13 78.6 97 53.6
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 2.9e-13 78.6 97 53.6
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 2.9e-13 78.6 96 53.1
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 2.9e-13 78.6 97 52.6
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 2.9e-13 78.6 97 52.6
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.9e-13 78.6 97 53.6
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 2.9e-13 78.6 97 52.6
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 3.8e-13 78.2 97 51.5
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 3.8e-13 78.2 97 51.5
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 3.8e-13 78.2 97 52.6
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 5.0e-13 77.8 97 51.5
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 5.0e-13 77.8 97 52.6
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 5.0e-13 77.8 97 51.5
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 5.0e-13 77.8 97 52.6
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 5.0e-13 77.8 94 53.2
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 6.5e-13 77.4 101 51.5
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 6.5e-13 77.4 93 54.8
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 6.5e-13 77.4 93 54.8
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 6.5e-13 77.4 97 51.5
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.5e-13 77.4 94 54.3
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 6.5e-13 77.4 97 52.6
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 6.5e-13 77.4 97 52.6
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 6.5e-13 77.4 93 53.8
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 8.6e-13 77.0 97 52.6
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 8.6e-13 77.0 97 50.5
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 8.6e-13 77.0 97 51.5
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.1e-12 76.6 98 53.1
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.5e-12 76.3 97 51.5
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.5e-12 76.3 97 51.5
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.5e-12 76.3 97 51.5
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.5e-12 76.3 97 51.5
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 1.5e-12 76.3 97 52.6
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.5e-12 76.3 97 52.6
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.9e-12 75.9 94 53.2
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 51.5
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.9e-12 75.9 97 50.5
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.5e-12 75.5 97 51.5
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.5e-12 75.5 97 49.5
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.5e-12 75.5 98 52.0
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 2.5e-12 75.5 97 50.5
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.5e-12 75.5 98 52.0
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 3.2e-12 75.1 98 52.0
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.2e-12 74.7 97 49.5
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 4.2e-12 74.7 97 49.5
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 5.5e-12 74.3 97 50.5
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 5.5e-12 74.3 97 50.5
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 5.5e-12 74.3 97 50.5
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 5.5e-12 74.3 98 50.0
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 7.2e-12 73.9 99 50.5
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 7.2e-12 73.9 98 51.0
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 7.2e-12 73.9 98 51.0
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 7.2e-12 73.9 98 51.0
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 7.2e-12 73.9 97 49.5
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 7.2e-12 73.9 98 51.0
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 7.2e-12 73.9 97 50.5
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 7.2e-12 73.9 97 50.5
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 9.5e-12 73.6 98 51.0
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 9.5e-12 73.6 98 51.0
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 9.5e-12 73.6 98 51.0
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 9.5e-12 73.6 98 51.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 9.5e-12 73.6 98 51.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.2e-11 73.2 98 50.0
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.6e-11 72.8 97 48.5
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.6e-11 72.8 97 47.4
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 1.6e-11 72.8 97 47.4
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.6e-11 72.8 97 49.5
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.6e-11 72.8 97 49.5
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.6e-11 72.8 97 48.5
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.1e-11 72.4 98 49.0
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.1e-11 72.4 98 50.0
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.1e-11 72.4 97 48.5
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 2.8e-11 72.0 98 50.0
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.8e-11 72.0 98 50.0
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.8e-11 72.0 98 50.0
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 2.8e-11 72.0 97 48.5
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 8.0e-11 70.5 68 63.2
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.0e-10 70.1 54 68.5
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.0e-10 70.1 69 59.4
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.4e-10 69.7 113 44.2
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.8e-10 69.3 97 46.4
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 2.3e-10 68.9 97 48.5
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.3e-10 68.9 92 44.6
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 4.0e-10 68.2 108 45.4
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 6.8e-10 67.4 97 45.4
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 7.0e-07 57.4 67 50.7
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.6e-06 56.2 81 43.2


User provided reference genes

Program Settings