Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 4.5e-206 721.1 380 100.0
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.0e-145 519.6 381 71.7
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.2e-137 493.8 380 67.4
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 3.5e-81 306.2 313 56.2
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 2.8e-70 270.0 306 47.7
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 4.0e-69 266.2 355 47.0
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 2.6e-68 263.5 306 50.7
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.4e-68 262.7 307 45.9
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 4.4e-68 262.7 335 46.6
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.3e-67 261.2 340 41.5
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.7e-67 260.8 305 47.2
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.1e-66 258.1 307 47.9
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 2.4e-66 256.9 305 47.5
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 2.4e-66 256.9 334 43.7
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.1e-66 256.5 306 45.4
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.6e-65 254.2 306 44.4
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.0e-65 253.8 318 46.2
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.0e-65 253.8 318 46.2
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 2.0e-65 253.8 306 46.7
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 2.7e-65 253.4 306 46.4
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 3.5e-65 253.1 306 47.4
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 5.9e-65 252.3 318 46.2
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 1.0e-64 251.5 306 43.1
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.7e-64 250.8 305 47.2
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 2.3e-64 250.4 344 41.9
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 6.6e-64 248.8 333 41.4
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 2.5e-63 246.9 305 45.9
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.2e-62 244.6 341 41.6
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.1e-62 243.8 307 47.6
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 2.1e-62 243.8 334 43.7
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 2.8e-62 243.4 307 43.0
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.4e-61 241.1 305 47.9
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.8e-61 240.7 351 40.2
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 4.0e-61 239.6 331 39.3
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 8.9e-61 238.4 305 43.3
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 1.2e-60 238.0 335 41.2
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.5e-60 237.7 306 45.1
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.0e-60 237.3 305 47.5
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 2.6e-60 236.9 342 39.5
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 4.4e-60 236.1 314 40.4
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 4.4e-60 236.1 306 43.1
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 4.4e-60 236.1 318 45.0
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 5.8e-60 235.7 309 41.7
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 7.5e-60 235.3 305 42.0
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.3e-59 234.6 300 42.3
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 2.9e-59 233.4 305 41.6
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 3.7e-59 233.0 346 39.0
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 4.9e-59 232.6 311 43.1
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 8.3e-59 231.9 310 40.0
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 1.1e-58 231.5 310 40.0
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 9.2e-58 228.4 257 48.2
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 9.2e-58 228.4 305 40.3
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.2e-57 228.0 314 43.9
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 1.6e-57 227.6 337 38.6
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 2.7e-57 226.9 311 40.2
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.7e-57 226.9 321 41.4
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 2.7e-57 226.9 322 41.9
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.0e-56 224.9 261 47.5
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.3e-56 224.6 307 43.3
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 1.3e-56 224.6 304 47.0
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.7e-56 224.2 348 42.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 1.7e-56 224.2 321 40.8
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.3e-56 223.8 312 41.7
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 2.3e-56 223.8 293 41.3
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 3.0e-56 223.4 306 43.8
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 3.0e-56 223.4 307 39.4
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 3.9e-56 223.0 304 39.8
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.9e-56 223.0 311 41.2
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 6.6e-56 222.2 299 41.1
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 1.1e-55 221.5 313 42.5
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.5e-55 221.1 305 40.3
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 3.3e-55 219.9 310 42.6
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 3.3e-55 219.9 309 38.5
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 4.3e-55 219.5 316 42.4
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 5.6e-55 219.2 306 42.2
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 7.3e-55 218.8 300 41.3
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.2e-54 218.0 308 39.6
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 1.2e-54 218.0 249 47.4
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 2.1e-54 217.2 300 43.0
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 2.8e-54 216.9 278 42.1
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 6.2e-54 215.7 306 41.5
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 4.0e-53 213.0 328 41.8
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 5.2e-53 212.6 306 41.8
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 6.8e-53 212.2 308 42.2
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 6.8e-53 212.2 312 40.4
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 6.8e-53 212.2 311 38.6
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 8.9e-53 211.8 306 38.9
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.2e-52 211.5 305 42.6
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.5e-52 211.1 306 41.8
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 2.0e-52 210.7 344 39.5
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 2.0e-52 210.7 253 45.8
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 2.6e-52 210.3 306 41.5
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.4e-52 209.9 313 38.7
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.3e-51 208.0 307 37.1
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.3e-51 208.0 310 40.6
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 2.9e-51 206.8 312 41.7
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 3.7e-51 206.5 306 40.5
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 3.7e-51 206.5 306 40.5
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 4.9e-51 206.1 305 38.7
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 1.1e-50 204.9 306 40.5
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.4e-50 204.5 280 42.9
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.9e-50 204.1 289 38.8
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 4.1e-50 203.0 310 40.3
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 5.4e-50 202.6 326 38.7
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 9.2e-50 201.8 308 40.6
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 6.0e-49 199.1 306 39.9
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 1.0e-48 198.4 262 46.6
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.0e-48 196.8 341 35.8
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 8.6e-48 195.3 272 44.1
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.9e-47 194.1 270 43.0
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 3.3e-47 193.4 292 38.0
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 7.3e-47 192.2 311 36.3
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.1e-46 190.7 322 38.2
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.6e-46 189.9 239 42.7
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.4e-45 188.0 381 33.1
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.1e-45 186.8 377 33.7
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.1e-45 186.8 377 33.7
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 4.0e-45 186.4 360 35.3
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.3e-43 181.4 249 41.0
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 2.9e-43 180.3 306 33.7
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 6.0e-41 172.6 358 34.6
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 3.6e-38 163.3 220 49.1
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 4.7e-38 162.9 332 32.8
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 8.1e-38 162.2 268 36.9
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 3.1e-37 160.2 253 40.3
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.2e-37 159.5 197 43.7
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 6.8e-37 159.1 251 41.8
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 6.4e-35 152.5 258 42.2
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 8.4e-35 152.1 224 42.4
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 9.2e-34 148.7 308 33.8
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.7e-33 147.1 323 33.7
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 6.0e-33 146.0 278 32.4
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 1.3e-32 144.8 260 35.0
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.7e-32 144.4 269 36.1
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 3.1e-29 133.7 307 31.9
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 6.9e-29 132.5 112 55.4
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 9.0e-29 132.1 147 48.3
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.0e-28 131.0 235 35.3
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 4.4e-28 129.8 157 45.2
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 2.2e-27 127.5 257 33.1
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.9e-27 126.3 140 46.4
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 4.8e-22 109.8 140 43.6
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 5.3e-21 106.3 133 44.4
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 1.5e-20 104.8 103 51.5
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 5.8e-20 102.8 139 38.1
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.9e-20 102.1 166 39.2
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.3e-19 101.7 76 60.5
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.7e-19 101.3 245 29.4
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.2e-18 96.7 335 26.9
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 7.9e-17 92.4 340 25.0
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 1.1e-13 82.0 99 43.4
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.1e-13 82.0 392 24.0
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.8e-13 81.3 134 38.1
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.8e-13 81.3 115 37.4
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.1e-13 80.5 102 43.1
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 2.9e-11 73.9 110 37.3
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 2.5e-10 70.9 83 41.0
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.2e-10 70.5 303 26.4
SMO174G0183 Selaginella moellendorffii HOM05D010282 ORTHO05D004792 2.7e-09 67.4 301 27.6
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 7.9e-09 65.9 45 66.7
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.3e-08 64.3 107 38.3
Ah.06g185670 Amaranthus hybridus HOM05D001248 ORTHO05D001183 3.0e-08 63.9 301 26.9
Pp3c2_8490 Physcomitrium patens HOM05D001248 ORTHO05D001183 3.9e-08 63.5 315 26.7
SEGI_40610 Sequoiadendron giganteum HOM05D001248 ORTHO05D001183 5.1e-08 63.2 337 24.0
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 6.7e-08 62.8 92 37.0
Pp3c1_42710 Physcomitrium patens HOM05D001248 ORTHO05D001183 8.7e-08 62.4 312 25.6
VMungo1215G0319 Vigna mungo HOM05D001248 ORTHO05D001183 3.3e-07 60.5 302 23.5
Os07g0102400 Oryza sativa ssp. japonica HOM05D001248 ORTHO05D001183 9.6e-07 58.9 311 23.8
Sopen01g047770 Solanum pennellii HOM05D001248 ORTHO05D001183 9.6e-07 58.9 307 23.1
Solyc01g105270.4 Solanum lycopersicum HOM05D001248 ORTHO05D001183 1.3e-06 58.5 307 22.8
Glyma.20G010800 Glycine max HOM05D001248 ORTHO05D001183 2.1e-06 57.8 302 24.5
CBR_g20333 Chara braunii HOM05D001248 ORTHO05D001183 3.7e-06 57.0 307 25.1
CBR_g22030 Chara braunii HOM05D001248 ORTHO05D001183 4.8e-06 56.6 305 24.3
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 4.8e-06 56.6 69 40.6


User provided reference genes

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