Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 0.0e+00 1184.5 622 100.0
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 4.2e-310 1067.4 558 100.0
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.2e-202 709.5 557 72.4
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 2.9e-101 373.6 573 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 4.6e-99 366.3 362 61.0
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.5e-68 264.2 343 51.0
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 6.3e-64 249.6 357 45.9
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 6.3e-64 249.6 353 43.9
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 9.1e-63 245.7 548 38.5
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 3.0e-58 230.7 354 39.3
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 1.7e-53 214.9 535 35.1
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 2.5e-52 211.1 452 35.4
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 1.4e-50 205.3 370 38.4
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 5.2e-50 203.4 465 35.7
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 5.2e-50 203.4 355 39.4
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 8.8e-50 202.6 532 33.8
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 2.0e-49 201.4 416 36.1
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 7.5e-49 199.5 337 39.8
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 7.5e-49 199.5 355 39.4
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.3e-48 198.7 334 38.0
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 2.2e-48 198.0 355 37.5
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 8.3e-48 196.1 465 34.8
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 2.4e-47 194.5 329 37.7
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.1e-47 194.1 340 37.9
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 4.1e-47 193.7 357 36.4
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 5.4e-47 193.4 328 38.4
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 7.0e-47 193.0 538 32.2
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 9.1e-47 192.6 334 38.9
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 9.1e-47 192.6 572 34.3
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 1.2e-46 192.2 339 39.2
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 1.6e-46 191.8 540 34.6
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.6e-46 191.8 457 34.8
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 3.5e-46 190.7 341 36.4
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 7.7e-46 189.5 353 37.7
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.0e-45 189.1 331 38.7
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.3e-45 188.7 328 38.4
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 1.3e-45 188.7 333 39.0
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 1.7e-45 188.3 354 37.6
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 3.8e-45 187.2 332 38.3
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 3.8e-45 187.2 458 33.4
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 6.6e-45 186.4 461 33.8
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 6.6e-45 186.4 368 36.1
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 8.6e-45 186.0 540 33.0
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 8.6e-45 186.0 331 37.2
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.1e-44 185.7 544 33.6
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 1.9e-44 184.9 343 36.7
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 1.9e-44 184.9 332 37.7
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 2.5e-44 184.5 357 35.0
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 4.2e-44 183.7 331 36.6
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 4.2e-44 183.7 334 36.5
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 9.5e-44 182.6 535 31.6
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 1.2e-43 182.2 338 35.5
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 1.2e-43 182.2 332 37.3
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 2.1e-43 181.4 354 36.2
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.1e-43 181.4 514 32.7
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 2.8e-43 181.0 350 35.1
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 2.8e-43 181.0 544 34.0
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 4.7e-43 180.3 467 33.0
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 4.7e-43 180.3 455 31.9
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 1.0e-42 179.1 528 30.7
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 1.0e-42 179.1 517 32.3
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 1.4e-42 178.7 336 35.1
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 1.4e-42 178.7 351 36.2
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 1.4e-42 178.7 518 34.0
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 1.4e-42 178.7 533 32.1
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 1.4e-42 178.7 453 32.2
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.4e-42 178.7 340 35.3
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 1.8e-42 178.3 551 31.9
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.8e-42 178.3 371 35.0
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 2.3e-42 177.9 549 33.0
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 3.0e-42 177.6 512 32.2
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 3.0e-42 177.6 461 32.5
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 4.0e-42 177.2 536 32.1
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 6.8e-42 176.4 325 36.6
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 6.8e-42 176.4 331 36.3
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 8.9e-42 176.0 351 36.2
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 8.9e-42 176.0 456 32.7
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 8.9e-42 176.0 523 31.2
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 8.9e-42 176.0 523 31.2
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 1.2e-41 175.6 345 35.1
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 1.2e-41 175.6 351 36.2
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 1.5e-41 175.3 351 35.0
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 1.5e-41 175.3 358 34.1
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.5e-41 175.3 554 30.3
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 2.0e-41 174.9 472 31.4
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 2.6e-41 174.5 532 32.5
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 2.6e-41 174.5 534 32.6
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 3.4e-41 174.1 518 34.0
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 3.4e-41 174.1 330 37.6
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 4.4e-41 173.7 536 31.5
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 4.4e-41 173.7 360 36.4
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 5.7e-41 173.3 354 34.5
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 5.7e-41 173.3 354 34.5
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 7.5e-41 172.9 526 34.0
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 9.8e-41 172.6 459 31.8
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 9.8e-41 172.6 538 31.8
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 2.2e-40 171.4 530 31.5
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 2.8e-40 171.0 494 32.6
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 4.9e-40 170.2 452 31.6
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 6.3e-40 169.9 539 31.4
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 8.3e-40 169.5 335 34.6
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 8.3e-40 169.5 526 31.4
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 1.4e-39 168.7 539 30.2
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 1.4e-39 168.7 356 33.7
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 1.4e-39 168.7 530 31.9
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.8e-39 168.3 467 31.3
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 3.1e-39 167.5 530 30.8
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 4.1e-39 167.2 534 32.2
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 5.4e-39 166.8 529 30.8
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 5.4e-39 166.8 459 32.2
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 5.4e-39 166.8 549 32.8
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 7.0e-39 166.4 544 31.4
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 7.0e-39 166.4 309 36.2
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 1.6e-38 165.2 507 31.4
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 1.6e-38 165.2 457 32.4
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 2.0e-38 164.9 467 31.7
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 3.5e-38 164.1 527 30.2
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.5e-38 163.7 467 31.5
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.5e-38 163.7 467 31.5
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.0e-37 162.5 335 33.1
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 1.0e-37 162.5 457 31.5
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 1.0e-37 162.5 471 32.5
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 1.0e-37 162.5 544 32.7
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 1.7e-37 161.8 530 31.1
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 3.8e-37 160.6 536 31.2
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 4.3e-36 157.1 531 30.1
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 4.3e-36 157.1 453 32.9
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 5.6e-36 156.8 543 30.8
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 9.5e-36 156.0 529 28.9
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 1.2e-35 155.6 532 29.5
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 3.6e-35 154.1 531 29.8
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 3.6e-35 154.1 468 29.9
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.8e-34 151.8 329 35.0
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 5.2e-34 150.2 532 30.1
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 7.5e-33 146.4 470 30.4
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 4.9e-32 143.7 462 29.2
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 1.4e-31 142.1 552 29.0
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 1.4e-31 142.1 491 31.0
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 1.4e-31 142.1 510 29.4
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 1.9e-31 141.7 512 29.7
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 2.4e-31 141.4 359 29.8
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 6.0e-30 136.7 457 29.5
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.3e-29 135.6 258 36.4
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 3.0e-29 134.4 296 33.8
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 3.9e-29 134.0 527 28.5
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.3e-28 131.0 548 29.2
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 5.6e-28 130.2 484 28.1
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 5.2e-26 123.6 262 34.0
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 1.2e-25 122.5 343 28.3
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 3.4e-25 120.9 122 48.4
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 1.4e-23 115.5 148 42.6
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 2.4e-23 114.8 145 42.8
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 2.4e-23 114.8 321 30.8
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 5.1e-21 107.1 534 27.5
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 4.3e-20 104.0 538 27.5
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.4e-18 99.0 288 29.2
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 1.8e-18 98.6 258 31.0
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 3.1e-18 97.8 315 31.1
Haze_17061 Corylus avellana HOM05D003373 ORTHO05D004419 2.0e-17 95.1 82 54.9
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 4.4e-17 94.0 71 69.0
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 3.7e-16 90.9 222 34.2
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.7e-16 90.9 532 26.3
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 3.7e-16 90.9 113 52.2
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 1.1e-12 79.3 230 29.6
C02p06900 Brassica napus HOM05D003373 ORTHO05D004419 3.3e-12 77.8 94 42.6
C02p07020 Brassica napus HOM05D003373 ORTHO05D004419 3.3e-12 77.8 94 42.6
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.2e-11 75.9 265 27.2
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 2.8e-11 74.7 75 54.7
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 3.6e-11 74.3 71 56.3
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 8.1e-11 73.2 69 55.1
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 2.6e-09 68.2 70 52.9
SalBow8G0677 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.3e-08 65.9 77 44.2
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 3.8e-08 64.3 61 55.7
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 4.9e-08 63.9 72 51.4
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 1.4e-07 62.4 145 37.2
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 4.2e-07 60.8 59 52.5
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 4.2e-07 60.8 59 52.5
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 4.2e-07 60.8 59 52.5
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 9.2e-07 59.7 128 37.5
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 2.1e-06 58.5 111 35.1
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 2.7e-06 58.2 69 49.3
HPP92_019602 Vanilla planifolia HOM05D003373 ORTHO05D004419 3.5e-06 57.8 80 38.8
BcaC03g15848 Brassica carinata HOM05D007458 ORTHO05D009533 7.8e-06 56.6 68 42.6


User provided reference genes

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