Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 7.3e-183 644.0 395 100.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.7e-135 484.2 387 77.8
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.8e-118 429.5 384 70.8
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.5e-58 231.1 244 54.9
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 2.8e-57 226.9 315 54.0
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 2.9e-54 216.9 231 54.1
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 9.2e-53 211.8 224 51.3
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 9.2e-53 211.8 225 52.9
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.2e-52 211.5 224 51.3
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 7.8e-52 208.8 225 49.8
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.0e-51 208.4 225 50.7
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.3e-51 208.0 243 50.2
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.3e-51 208.0 225 50.7
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.7e-51 207.6 228 52.2
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 2.3e-51 207.2 226 50.0
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 3.0e-51 206.8 241 48.5
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 3.0e-51 206.8 242 48.8
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 3.9e-51 206.5 220 50.5
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 3.9e-51 206.5 242 49.2
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 6.6e-51 205.7 242 49.6
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 8.7e-51 205.3 226 50.9
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.9e-50 204.1 241 49.0
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.5e-50 203.8 225 52.0
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 4.3e-50 203.0 246 47.2
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 4.3e-50 203.0 229 49.3
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.3e-50 203.0 229 49.3
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 5.6e-50 202.6 249 48.2
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 7.3e-50 202.2 232 50.9
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 9.6e-50 201.8 248 48.0
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 9.6e-50 201.8 228 51.3
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 9.6e-50 201.8 225 50.2
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.2e-49 201.4 225 49.8
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.2e-49 201.4 225 49.8
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.2e-49 201.4 238 49.6
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.2e-49 201.4 242 48.8
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.2e-49 201.4 248 47.2
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.2e-49 201.4 241 50.2
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.6e-49 201.1 240 48.8
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.6e-49 201.1 240 48.8
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.6e-49 201.1 228 50.4
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.6e-49 201.1 221 51.6
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.1e-49 200.7 225 51.6
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 2.1e-49 200.7 240 48.8
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 2.1e-49 200.7 225 49.8
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.6e-49 199.9 226 51.3
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.6e-49 199.9 229 48.5
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.6e-49 199.9 229 48.9
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 3.6e-49 199.9 225 49.8
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 4.7e-49 199.5 246 46.3
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 4.7e-49 199.5 221 52.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 6.2e-49 199.1 246 47.2
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 6.2e-49 199.1 221 51.1
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 8.1e-49 198.7 231 48.9
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.1e-48 198.4 251 48.6
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 1.1e-48 198.4 222 49.1
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 1.4e-48 198.0 248 47.6
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.4e-48 198.0 245 47.8
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.8e-48 197.6 225 49.3
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.8e-48 197.6 255 44.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.8e-48 197.6 221 51.6
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.8e-48 197.6 225 49.3
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.4e-48 197.2 225 50.2
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 2.4e-48 197.2 228 50.0
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.4e-48 197.2 244 45.9
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 3.1e-48 196.8 226 48.2
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 3.1e-48 196.8 238 49.2
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 3.1e-48 196.8 220 51.4
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 3.1e-48 196.8 243 49.0
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 4.0e-48 196.4 243 47.3
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 5.3e-48 196.1 225 50.7
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 6.9e-48 195.7 225 50.2
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 6.9e-48 195.7 225 50.7
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 9.0e-48 195.3 221 50.7
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.2e-47 194.9 225 48.9
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.2e-47 194.9 325 53.2
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.5e-47 194.5 225 48.4
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.5e-47 194.5 224 48.2
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 2.0e-47 194.1 224 49.1
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.0e-47 194.1 221 50.2
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 3.4e-47 193.4 224 49.6
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 4.4e-47 193.0 224 47.8
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 4.4e-47 193.0 240 48.3
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 5.8e-47 192.6 240 47.9
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 7.6e-47 192.2 225 49.3
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 9.9e-47 191.8 245 46.5
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 9.9e-47 191.8 225 47.6
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.3e-46 191.4 242 46.3
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 1.3e-46 191.4 239 46.9
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.9e-46 190.3 242 46.3
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 2.9e-46 190.3 225 48.0
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.8e-46 189.9 224 48.2
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 3.8e-46 189.9 224 49.1
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.9e-45 187.6 225 48.9
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 2.4e-45 187.2 226 48.2
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 4.2e-45 186.4 221 49.3
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 4.2e-45 186.4 226 48.2
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 4.6e-44 183.0 224 46.0
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 6.0e-44 182.6 227 48.0
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 6.0e-44 182.6 227 48.0
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 1.0e-43 181.8 227 48.0
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.1e-42 178.3 225 45.8
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.5e-42 177.2 196 49.5
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 9.6e-42 175.3 225 45.3
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 6.2e-41 172.6 201 49.3
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 3.8e-38 163.3 210 48.1
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 3.5e-36 156.8 188 48.9
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 3.3e-34 150.2 221 44.3
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 5.3e-32 142.9 115 61.7
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 7.6e-31 139.0 175 46.3
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 3.2e-29 133.7 227 38.8
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 1.3e-27 128.3 103 62.1
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 8.7e-27 125.6 176 42.0
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.9e-26 124.4 171 42.7
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.1e-25 120.9 221 39.4
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 3.2e-21 107.1 141 43.3
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.8e-16 91.3 77 58.4
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 5.9e-15 86.3 88 51.1
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 4.6e-12 76.6 66 56.1
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 3.0e-11 73.9 66 54.5
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.7e-06 58.2 59 45.8


User provided reference genes

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