Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.0e-105 386.0 220 100.0
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 5.6e-23 112.1 155 43.2
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 2.1e-22 110.2 166 38.6
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 2.8e-22 109.8 152 41.4
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 8.0e-22 108.2 152 42.1
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.3e-21 106.7 173 39.9
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 5.2e-21 105.5 213 34.7
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 6.8e-21 105.1 152 40.8
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.2e-20 104.4 148 41.2
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.5e-20 104.0 148 41.9
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 2.0e-20 103.6 176 36.9
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 4.4e-20 102.4 151 41.1
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 4.4e-20 102.4 174 37.4
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 5.7e-20 102.1 149 40.3
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 5.7e-20 102.1 156 41.0
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 5.7e-20 102.1 156 41.0
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 1.3e-19 100.9 148 41.2
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.7e-19 100.5 148 39.9
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.2e-19 100.1 149 39.6
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 2.2e-19 100.1 156 39.1
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.9e-19 99.8 152 37.5
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 4.9e-19 99.0 151 39.1
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 6.4e-19 98.6 149 38.9
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 6.4e-19 98.6 189 35.4
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 6.4e-19 98.6 149 38.9
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 8.3e-19 98.2 152 38.8
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 8.3e-19 98.2 152 38.8
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 8.3e-19 98.2 148 38.5
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 8.3e-19 98.2 149 38.3
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 8.3e-19 98.2 148 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.1e-18 97.8 169 36.1
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 1.1e-18 97.8 149 36.9
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.1e-18 97.8 148 39.2
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 1.4e-18 97.4 149 37.6
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.4e-18 97.4 149 37.6
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.4e-18 97.4 161 36.6
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 1.8e-18 97.1 152 38.2
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 2.4e-18 96.7 148 37.8
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 4.1e-18 95.9 152 36.2
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 4.1e-18 95.9 159 38.4
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 5.4e-18 95.5 148 39.9
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 7.0e-18 95.1 183 35.0
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 9.2e-18 94.7 177 35.0
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-17 94.0 151 36.4
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.6e-17 94.0 159 37.7
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 2.0e-17 93.6 148 37.8
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 2.0e-17 93.6 159 37.1
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 2.7e-17 93.2 148 37.2
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 3.5e-17 92.8 147 36.1
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.5e-17 92.8 149 37.6
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 3.5e-17 92.8 176 36.4
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.6e-17 92.4 148 37.8
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 4.6e-17 92.4 151 34.4
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 4.6e-17 92.4 155 34.2
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 5.9e-17 92.0 149 37.6
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 5.9e-17 92.0 148 37.2
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 5.9e-17 92.0 148 35.8
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 5.9e-17 92.0 190 33.2
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 5.9e-17 92.0 149 38.9
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 7.8e-17 91.7 148 36.5
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.8e-17 91.7 149 36.9
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.0e-16 91.3 206 32.0
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.0e-16 91.3 147 35.4
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 1.0e-16 91.3 151 37.1
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.0e-16 91.3 147 38.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.7e-16 90.5 147 36.1
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.7e-16 90.5 197 32.0
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.7e-16 90.5 147 38.8
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.3e-16 90.1 177 33.3
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 3.9e-16 89.4 177 34.5
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 6.6e-16 88.6 141 38.3
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 6.6e-16 88.6 148 36.5
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 6.6e-16 88.6 148 36.5
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 6.6e-16 88.6 210 31.0
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 1.1e-15 87.8 151 36.4
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.1e-15 87.8 177 32.8
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.1e-15 87.8 144 37.5
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.1e-15 87.8 149 38.3
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.5e-15 87.4 203 33.0
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 1.9e-15 87.0 148 36.5
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.5e-15 86.7 151 36.4
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 3.3e-15 86.3 139 38.8
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.3e-15 85.9 148 35.1
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 4.3e-15 85.9 184 34.2
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 4.3e-15 85.9 144 37.5
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 5.6e-15 85.5 148 36.5
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 5.6e-15 85.5 145 37.9
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 7.3e-15 85.1 192 32.3
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 7.3e-15 85.1 148 35.1
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 9.5e-15 84.7 149 34.9
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 2.1e-14 83.6 139 36.7
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.1e-14 83.6 148 36.5
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 2.8e-14 83.2 147 38.1
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.8e-14 83.2 152 34.2
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 2.8e-14 83.2 138 38.4
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 2.8e-14 83.2 139 38.1
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 3.6e-14 82.8 155 32.3
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 3.6e-14 82.8 160 33.8
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 4.7e-14 82.4 155 32.9
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 4.7e-14 82.4 155 32.9
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 4.7e-14 82.4 155 32.9
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 4.7e-14 82.4 139 38.8
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 4.7e-14 82.4 172 33.7
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 4.7e-14 82.4 148 33.8
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 8.0e-14 81.6 151 38.4
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.0e-13 81.3 148 36.5
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.4e-13 80.9 167 34.1
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.4e-13 80.9 146 34.9
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.8e-13 80.5 205 31.7
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 8.9e-13 78.2 184 33.7
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 8.9e-13 78.2 124 38.7
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 8.9e-13 78.2 172 31.4
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 8.9e-13 78.2 183 30.1
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 2.0e-12 77.0 127 37.8
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 5.8e-12 75.5 149 32.9
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.3e-11 74.3 109 40.4
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 2.2e-11 73.6 135 31.9
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 2.2e-11 73.6 105 41.9
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 2.9e-11 73.2 106 38.7
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 3.7e-11 72.8 189 29.6
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.1e-10 71.2 106 36.8
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.1e-10 71.2 150 32.7
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.4e-10 70.9 108 36.1
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.4e-10 70.9 135 33.3
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.9e-10 70.5 150 34.0
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 1.9e-10 70.5 197 31.0
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 2.4e-10 70.1 121 36.4
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 3.2e-10 69.7 102 38.2
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.6e-09 67.4 83 47.0
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 2.0e-09 67.0 107 37.4
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.3e-08 64.3 135 31.1
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 5.6e-07 58.9 114 33.3
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.8e-06 56.6 94 35.1
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.8e-06 56.6 94 35.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 8.1e-06 55.1 72 45.8


User provided reference genes

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