Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 2547.7 1266 100.0
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 2199.1 1266 86.2
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 0.0e+00 1848.6 1273 72.3
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 0.0e+00 1632.5 1277 64.6
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 0.0e+00 1630.5 1271 64.9
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 0.0e+00 1629.0 1148 71.4
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 0.0e+00 1622.4 1277 65.2
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 0.0e+00 1614.4 1271 64.1
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 0.0e+00 1610.5 1271 64.8
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 0.0e+00 1606.3 1272 63.9
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 0.0e+00 1604.0 1269 64.0
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1597.4 1272 63.8
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 0.0e+00 1592.8 1271 64.2
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1591.6 1272 63.6
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1588.5 1272 63.9
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1587.8 1273 63.7
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 0.0e+00 1587.8 1273 63.8
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 0.0e+00 1585.9 1270 62.4
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1584.3 1279 63.4
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1583.5 1270 63.2
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1582.8 1299 62.6
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 0.0e+00 1582.4 1281 62.8
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 0.0e+00 1581.2 1271 63.2
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 0.0e+00 1580.8 1274 63.0
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1580.5 1280 63.0
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 0.0e+00 1579.7 1271 62.5
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 0.0e+00 1579.7 1273 63.6
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 0.0e+00 1573.9 1269 63.1
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1570.8 1270 63.3
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1569.3 1275 63.3
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 0.0e+00 1568.5 1267 62.9
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1567.4 1270 62.9
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 0.0e+00 1566.6 1222 64.8
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1566.2 1269 62.8
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1566.2 1268 63.1
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1564.7 1270 62.9
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1564.3 1273 62.6
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 0.0e+00 1563.9 1274 62.6
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1563.9 1276 62.7
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 0.0e+00 1563.5 1275 63.0
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1561.2 1272 62.7
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 0.0e+00 1560.4 1266 62.9
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 0.0e+00 1560.4 1282 62.3
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1560.0 1272 62.7
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1557.7 1271 62.3
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1557.7 1276 62.9
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1557.3 1273 63.2
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 0.0e+00 1557.0 1280 62.3
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1556.6 1273 62.6
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1556.2 1273 62.9
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 0.0e+00 1553.9 1271 62.4
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1553.9 1271 62.2
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1553.5 1271 62.2
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1552.3 1273 63.0
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1552.0 1274 62.2
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1550.0 1280 62.3
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1548.1 1271 62.1
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 0.0e+00 1548.1 1273 62.0
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1548.1 1267 62.4
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 0.0e+00 1546.6 1266 62.2
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1545.0 1276 62.1
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 0.0e+00 1544.6 1275 62.7
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1544.3 1271 62.2
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1541.9 1278 61.2
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1541.6 1272 61.9
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 0.0e+00 1541.6 1239 63.4
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 0.0e+00 1540.4 1277 62.7
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1539.2 1263 61.8
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 0.0e+00 1534.6 1275 62.4
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 0.0e+00 1534.2 1271 62.5
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1533.9 1275 62.0
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 0.0e+00 1533.1 1274 61.9
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1531.9 1274 62.3
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1531.9 1305 61.0
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1530.8 1276 62.5
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 0.0e+00 1530.8 1276 62.5
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1527.7 1229 63.1
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1527.3 1275 62.3
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 0.0e+00 1525.4 1278 61.7
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1524.6 1275 62.0
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 0.0e+00 1524.2 1281 62.2
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 0.0e+00 1523.8 1275 61.9
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 0.0e+00 1520.4 1219 63.6
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1518.4 1278 60.8
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 0.0e+00 1511.1 1335 59.3
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 0.0e+00 1501.9 1306 60.5
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1500.0 1235 63.0
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 0.0e+00 1499.2 1237 62.0
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 0.0e+00 1498.8 1283 61.1
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1484.9 1216 62.3
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 0.0e+00 1483.0 1217 62.7
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 0.0e+00 1473.4 1390 56.3
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 0.0e+00 1465.3 1218 61.5
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 0.0e+00 1453.0 1272 59.3
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1447.6 1263 60.1
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1430.6 1271 58.3
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1425.2 1216 60.0
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 0.0e+00 1422.5 1385 55.6
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 0.0e+00 1404.0 1080 65.3
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1392.1 1095 64.0
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1386.7 1269 57.9
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1386.7 1065 64.9
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 0.0e+00 1360.9 1072 63.2
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 0.0e+00 1350.1 1274 57.0
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 0.0e+00 1349.7 1181 60.2
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 0.0e+00 1349.0 1144 61.2
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1347.0 1152 60.6
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1307.0 1153 58.6
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 0.0e+00 1293.5 1084 61.2
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 0.0e+00 1271.5 1352 52.5
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 0.0e+00 1204.5 1085 58.9
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1134.0 1020 59.2
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1115.5 846 66.8
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1098.6 944 60.1
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 6.6e-286 988.0 913 58.2
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 5.4e-272 941.8 848 58.4
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 3.2e-264 916.0 1081 48.9
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 1.3e-257 894.0 1083 48.2
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 7.6e-250 868.2 924 51.9
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 1.1e-248 864.4 1012 49.4
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.9e-223 778.5 723 56.8
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.2e-212 743.8 727 55.3
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.5e-200 703.7 542 66.6
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 5.9e-186 656.0 872 43.7
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.6e-175 621.3 1455 32.5
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.0e-161 575.5 532 56.8
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.6e-151 540.4 363 72.7
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 5.4e-147 526.6 448 59.4
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 4.2e-131 473.8 644 45.0
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.1e-110 406.0 267 73.4
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.0e-100 372.9 320 60.3
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.0e-100 372.9 412 51.7
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 4.4e-88 330.9 304 55.6
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.8e-86 325.5 279 60.6
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 4.2e-83 314.3 211 72.5
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.6e-82 312.4 209 72.2
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 5.6e-75 287.3 183 73.8
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 4.7e-74 284.3 343 46.6
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 6.6e-68 263.8 208 63.5
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 3.6e-66 258.1 173 70.5
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.3e-55 223.0 343 40.2
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 4.1e-54 218.0 445 34.6
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.4e-46 191.0 137 70.1
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 2.1e-45 189.1 137 65.0
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 1.6e-42 179.5 125 68.0
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 2.2e-39 169.1 193 49.2
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 3.9e-36 158.3 454 29.5
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 3.3e-35 155.2 169 50.9
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 4.3e-35 154.8 448 29.7
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 6.2e-34 151.0 130 56.2
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 9.0e-33 147.1 441 29.3
CSS0034529 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 3.4e-32 145.2 188 45.2
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 1.7e-31 142.9 169 47.9
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.3e-28 132.5 154 50.6
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 1.5e-24 119.8 110 52.7
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 1.5e-24 119.8 110 52.7
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 1.5e-24 119.8 110 52.7
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 2.0e-24 119.4 81 70.4
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.4e-22 113.2 90 56.7
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 2.1e-21 109.4 75 65.3
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 7.9e-21 107.5 96 57.3
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.9e-20 105.1 76 61.8
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 8.7e-20 104.0 73 64.4
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-19 103.6 76 60.5
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-19 103.6 73 63.0
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.9e-19 102.8 76 59.2
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 5.3e-17 94.7 60 75.0
HPP92_010572 Vanilla planifolia HOM05D003479 ORTHO05D004659 5.3e-17 94.7 103 48.5
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 3.8e-15 88.6 50 76.0
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.9e-14 86.3 151 41.7
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 5.5e-14 84.7 92 53.3
FAN20G0117 Fragaria x ananassa HOM05D003479 ORTHO05D019150 1.5e-11 76.6 142 39.4
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 3.1e-09 68.9 44 65.9
FAN07G2139 Fragaria x ananassa HOM05D003479 ORTHO05D019150 4.1e-09 68.6 74 50.0
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 5.3e-09 68.2 46 65.2
FAN21G3631 Fragaria x ananassa HOM05D003479 ORTHO05D019150 6.9e-09 67.8 81 45.7
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 6.9e-09 67.8 42 78.6
C08p36950 Brassica napus HOM05D003479 ORTHO05D040158 1.7e-07 63.2 45 64.4
PRCOL_00006887 Prasinoderma coloniale HOM05D000749 ORTHO05D001296 2.9e-07 62.4 251 28.7
FAN07G2883 Fragaria x ananassa HOM05D003479 ORTHO05D019150 4.2e-06 58.5 121 33.9
MBI11_g09451_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.2e-06 58.5 124 32.3


User provided reference genes

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