Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_5830 Physcomitrium patens HOM05D014145 ORTHO05D017340 0.0e+00 1125.2 603 100.0
SMO139G0047 Selaginella moellendorffii HOM05D014145 ORTHO05D017340 8.8e-79 298.9 473 42.9
Cre14.g612700 Chlamydomonas reinhardtii HOM05D014145 ORTHO05D017340 2.3e-39 167.9 518 35.1
PRCOL_00006917 Prasinoderma coloniale HOM05D014145 ORTHO05D017340 4.7e-32 143.7 488 29.9
AagrBONN_evm.TU.Sc2ySwM_117.1074 Anthoceros agrestis HOM05D014145 ORTHO05D017340 8.6e-26 122.9 273 32.2
MCO09G380 Micromonas commoda HOM05D014145 ORTHO05D017340 1.3e-21 109.0 131 40.5
MapolyY_A0011 Marchantia polymorpha HOM05D014145 ORTHO05D017340 2.4e-12 78.2 143 30.1
MapolyY_A0013 Marchantia polymorpha HOM05D014145 ORTHO05D253541 1.6e-11 75.5 79 48.1
Glyma.04G160700 Glycine max HOM05D003320 ORTHO05D003941 5.6e-09 67.0 105 33.3
Atru.chr9.522 Acer truncatum HOM05D003320 ORTHO05D003941 2.1e-08 65.1 273 22.0
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 2.1e-08 65.1 211 22.7
TAR629G1284 Trochodendron aralioides HOM05D003320 ORTHO05D003941 2.1e-08 65.1 99 31.3
COL.COLO4_24318 Corchorus olitorius HOM05D003320 ORTHO05D003941 2.8e-08 64.7 99 33.3
Thecc.03G104500 Theobroma cacao HOM05D003320 ORTHO05D003941 3.6e-08 64.3 99 32.3
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 6.2e-08 63.5 99 33.3
Aa31LG4G4440 Aethionema arabicum HOM05D003320 ORTHO05D003941 8.1e-08 63.2 175 25.1
Manes.14G087000 Manihot esculenta HOM05D003320 ORTHO05D003941 8.1e-08 63.2 211 23.2
Medtr4g109680 Medicago truncatula HOM05D003320 ORTHO05D003941 8.1e-08 63.2 99 32.3
THA.LOC104813890 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 1.1e-07 62.8 101 32.7
VMungo1309G1392 Vigna mungo HOM05D003320 ORTHO05D003941 1.1e-07 62.8 105 32.4
Ciclev10019467m.g Citrus clementina HOM05D003320 ORTHO05D003941 1.4e-07 62.4 101 31.7
Gorai.003G102300 Gossypium raimondii HOM05D003320 ORTHO05D003941 1.4e-07 62.4 98 31.6
TPR.G1978 Trifolium pratense HOM05D003320 ORTHO05D003941 1.4e-07 62.4 99 32.3
HanXRQChr09g0270371 Helianthus annuus HOM05D003320 ORTHO05D003941 1.8e-07 62.0 211 21.8
Sabra12G0045000 Salix brachista HOM05D003320 ORTHO05D003941 1.8e-07 62.0 99 30.3
AagrBONN_evm.TU.Sc2ySwM_23.4 Anthoceros agrestis HOM05D001137 ORTHO05D007568 3.1e-07 61.2 106 33.0
Migut.D01756 Erythranthe guttata HOM05D003320 ORTHO05D003941 3.1e-07 61.2 104 31.7
Sabra15G0084900 Salix brachista HOM05D003320 ORTHO05D003941 3.1e-07 61.2 100 31.0
BcaB05g24835 Brassica carinata HOM05D003320 ORTHO05D003941 4.0e-07 60.8 168 45.2
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 4.0e-07 60.8 104 31.7
Gohir.A03G070900 Gossypium hirsutum HOM05D003320 ORTHO05D003941 4.0e-07 60.8 99 31.3
Gohir.D03G097300 Gossypium hirsutum HOM05D003320 ORTHO05D003941 4.0e-07 60.8 98 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 5.3e-07 60.5 106 33.0
Carub.0001s1824 Capsella rubella HOM05D003320 ORTHO05D003941 5.3e-07 60.5 216 23.1
Ca_21762_v3 Cicer arietinum L. HOM05D003320 ORTHO05D003941 5.3e-07 60.5 99 32.3
Duzib205G0721 Durio zibethinus HOM05D003320 ORTHO05D003941 5.3e-07 60.5 99 30.3
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 5.3e-07 60.5 211 21.8
MD06G1203300 Malus domestica HOM05D003320 ORTHO05D003941 5.3e-07 60.5 253 19.8
Potri.015G059400 Populus trichocarpa HOM05D003320 ORTHO05D003941 5.3e-07 60.5 100 30.0
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 6.9e-07 60.1 199 40.2
CARHR019230 Cardamine hirsuta HOM05D003320 ORTHO05D003941 6.9e-07 60.1 215 23.7
Cpa.g.sc94.74 Carica papaya HOM05D003320 ORTHO05D003941 6.9e-07 60.1 99 30.3
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 6.9e-07 60.1 94 29.8
MD14G1213900 Malus domestica HOM05D003320 ORTHO05D003941 9.0e-07 59.7 99 31.3
Phvul.009G202800 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 9.0e-07 59.7 94 34.0
DCAR_023161 Daucus carota HOM05D003320 ORTHO05D003941 1.2e-06 59.3 99 31.3
Nn4g23462 Nelumbo nucifera HOM05D003320 ORTHO05D003941 1.2e-06 59.3 94 31.9
CANSAT25G3609 Cannabis sativa HOM05D003320 ORTHO05D003941 1.5e-06 58.9 101 31.7
CiPaw.11G055500 Carya illinoinensis HOM05D003320 ORTHO05D003941 1.5e-06 58.9 103 31.1
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 1.5e-06 58.9 84 38.1
A06p14720 Brassica napus HOM05D003320 ORTHO05D003941 2.0e-06 58.5 216 22.7
Cfa019354 Carpinus fangiana HOM05D003320 ORTHO05D003941 2.0e-06 58.5 99 31.3
Lj9A439T50 Lonicera japonica HOM05D003320 ORTHO05D003941 2.0e-06 58.5 94 33.0
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 2.0e-06 58.5 99 33.3
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 2.0e-06 58.5 99 33.3
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 2.0e-06 58.5 99 29.3
AL1G31050 Arabidopsis lyrata HOM05D003320 ORTHO05D003941 2.6e-06 58.2 216 22.7
PGR083G0488 Punica granatum HOM05D003320 ORTHO05D003941 2.6e-06 58.2 94 31.9
RcHm_v2.0_Chr7g0183311 Rosa chinensis HOM05D003320 ORTHO05D003941 2.6e-06 58.2 99 31.3
THA.LOC104808040 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 2.6e-06 58.2 101 31.7
AL2G34050 Arabidopsis lyrata HOM05D003320 ORTHO05D003941 3.4e-06 57.8 201 23.4
BraA06t24596Z Brassica rapa HOM05D003320 ORTHO05D003941 3.4e-06 57.8 216 22.7
Oeu057198.3 Olea europaea HOM05D003320 ORTHO05D003941 3.4e-06 57.8 104 31.7
Aa31LG7G3370 Aethionema arabicum HOM05D003320 ORTHO05D003941 4.5e-06 57.4 98 29.6
EL10Ac5g11158 Beta vulgaris HOM05D003320 ORTHO05D003941 4.5e-06 57.4 99 31.3
BcaC08g46820 Brassica carinata HOM05D003320 ORTHO05D003941 4.5e-06 57.4 94 33.0
BolC5t30390H Brassica oleracea HOM05D003320 ORTHO05D003941 4.5e-06 57.4 216 22.7
BolC6t39864H Brassica oleracea HOM05D003320 ORTHO05D003941 4.5e-06 57.4 94 33.0
Glyma.17G080100 Glycine max HOM05D003320 ORTHO05D003941 4.5e-06 57.4 99 31.3
Peaxi162Scf00201g00346 Petunia axillaris HOM05D003320 ORTHO05D003941 4.5e-06 57.4 165 43.0
AT1G18610 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 5.8e-06 57.0 215 23.3
BcaB05g24829 Brassica carinata HOM05D003320 ORTHO05D003941 5.8e-06 57.0 108 30.6
CAN.G1228.10 Capsicum annuum HOM05D003320 ORTHO05D003941 5.8e-06 57.0 94 33.0
CARHR067300 Cardamine hirsuta HOM05D003320 ORTHO05D003941 5.8e-06 57.0 211 22.7
Eucgr.B00616 Eucalyptus grandis HOM05D003320 ORTHO05D003941 5.8e-06 57.0 211 21.8
Nitab4.5_0007160g0030 Nicotiana tabacum HOM05D003320 ORTHO05D003941 5.8e-06 57.0 161 44.7
QL10p019950 Quercus lobata HOM05D003320 ORTHO05D003941 5.8e-06 57.0 99 30.3
Lj4g0022383 Lotus japonicus HOM05D003320 ORTHO05D003941 7.6e-06 56.6 99 29.3
Lalb_Chr13g0302781 Lupinus albus HOM05D003320 ORTHO05D003941 7.6e-06 56.6 99 30.3
Phvul.003G183500 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 7.6e-06 56.6 99 30.3
Sp1g16580 Schrenkiella parvula HOM05D003320 ORTHO05D003941 7.6e-06 56.6 99 30.3
BcaC05g25756 Brassica carinata HOM05D003320 ORTHO05D003941 9.9e-06 56.2 99 30.3
C05p16870 Brassica napus HOM05D003320 ORTHO05D003941 9.9e-06 56.2 216 22.2
SMO171G0124 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 9.9e-06 56.2 99 29.3
VMungo1215G1878 Vigna mungo HOM05D003320 ORTHO05D003941 9.9e-06 56.2 99 30.3


User provided reference genes

Program Settings