Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_4900 Physcomitrium patens HOM05D018674 ORTHO05D020861 0.0e+00 1172.9 626 100.0
Pp3c16_17380 Physcomitrium patens HOM05D018674 ORTHO05D020861 7.4e-238 827.4 583 73.4
Mapoly0020s0117 Marchantia polymorpha HOM05D018674 ORTHO05D020861 1.3e-138 497.7 571 51.5
SEGI_09038 Sequoiadendron giganteum HOM05D018674 ORTHO05D020861 1.1e-105 388.3 565 37.7
SEGI_04963 Sequoiadendron giganteum HOM05D018674 ORTHO05D020861 6.4e-56 223.0 341 44.0
SEGI_40276 Sequoiadendron giganteum HOM05D018674 ORTHO05D020861 3.0e-45 187.6 232 41.8
CBR_g23719 Chara braunii HOM05D002503 ORTHO05D002810 2.6e-17 94.7 505 26.7
Mapoly0026s0081 Marchantia polymorpha HOM05D001905 ORTHO05D001820 1.8e-13 82.0 473 23.3
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 7.4e-12 76.6 365 27.9
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 1.3e-11 75.9 377 26.0
AagrBONN_evm.TU.Sc2ySwM_344.1231 Anthoceros agrestis HOM05D001905 ORTHO05D001820 2.1e-11 75.1 378 23.8
SalBow6G1506 Salvia bowleyana HOM05D001905 ORTHO05D001820 3.7e-11 74.3 434 23.5
Sed0004912 Sechium edule HOM05D002125 ORTHO05D002105 4.8e-11 73.9 468 21.8
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.1e-10 72.8 445 23.6
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 2.4e-10 71.6 390 25.4
Manes.05G177200 Manihot esculenta HOM05D001905 ORTHO05D001820 2.4e-10 71.6 463 21.6
Nitab4.5_0003850g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 3.1e-10 71.2 405 23.0
TWI77G1029 Tripterygium wilfordii HOM05D002125 ORTHO05D002105 3.1e-10 71.2 412 21.6
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 5.3e-10 70.5 418 24.2
vmacro13456 Vaccinium macrocarpon HOM05D002503 ORTHO05D002810 6.9e-10 70.1 329 24.3
ClCG10G022490 Citrullus lanatus HOM05D002125 ORTHO05D002105 9.0e-10 69.7 505 22.2
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 9.0e-10 69.7 286 27.3
Sp1g34260 Schrenkiella parvula HOM05D001905 ORTHO05D001820 1.2e-09 69.3 370 25.4
Haze_05736 Corylus avellana HOM05D000710 ORTHO05D000336 2.0e-09 68.6 330 24.2
Nn8g39731 Nelumbo nucifera HOM05D001219 ORTHO05D001017 2.6e-09 68.2 478 20.9
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 3.4e-09 67.8 186 30.6
GSVIVG01024623001 Vitis vinifera HOM05D002125 ORTHO05D002105 3.4e-09 67.8 193 29.5
arahy.Tifrunner.gnm1.ann1.T7YMEL Arachis hypogaea HOM05D001219 ORTHO05D001017 5.8e-09 67.0 497 21.7
Cfa011140 Carpinus fangiana HOM05D002503 ORTHO05D002810 5.8e-09 67.0 365 24.1
COL.COLO4_26644 Corchorus olitorius HOM05D001219 ORTHO05D001017 7.6e-09 66.6 381 22.8
CiPaw.15G052100 Carya illinoinensis HOM05D001905 ORTHO05D001820 9.9e-09 66.2 243 29.2
Lj4C64T9 Lonicera japonica HOM05D001905 ORTHO05D001820 9.9e-09 66.2 435 22.8
Mapoly0010s0090 Marchantia polymorpha HOM05D002125 ORTHO05D002105 9.9e-09 66.2 358 23.5
TWI60G1191 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 9.9e-09 66.2 428 21.3
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 1.3e-08 65.9 308 24.4
BolC5t32351H Brassica oleracea HOM05D001905 ORTHO05D001820 1.3e-08 65.9 175 29.1
A05p21540 Brassica napus HOM05D001905 ORTHO05D001820 2.2e-08 65.1 136 34.6
BraA05t21074Z Brassica rapa HOM05D001905 ORTHO05D001820 2.2e-08 65.1 136 34.6
Thhalv10028532m.g Eutrema salsugineum HOM05D000530 ORTHO05D000621 2.9e-08 64.7 527 23.3
Pp3c6_26950 Physcomitrium patens HOM05D021880 ORTHO05D026584 2.9e-08 64.7 391 25.8
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 2.9e-08 64.7 396 24.5
arahy.Tifrunner.gnm1.ann1.P2NKR4 Arachis hypogaea HOM05D001219 ORTHO05D001017 3.8e-08 64.3 432 21.8
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 3.8e-08 64.3 347 25.6
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 3.8e-08 64.3 256 27.0
ATR0490G002 Amborella trichopoda HOM05D001905 ORTHO05D001820 4.9e-08 63.9 170 31.2
CiPaw.03G092300 Carya illinoinensis HOM05D002503 ORTHO05D002810 4.9e-08 63.9 372 23.4
CiPaw.16G037800 Carya illinoinensis HOM05D001905 ORTHO05D001820 4.9e-08 63.9 171 32.7
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 6.4e-08 63.5 347 25.6
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 8.4e-08 63.2 265 24.9
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 8.4e-08 63.2 349 25.5
A04p19710 Brassica napus HOM05D001818 ORTHO05D001780 8.4e-08 63.2 344 25.6
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 8.4e-08 63.2 348 25.6
CANSAT25G0567 Cannabis sativa HOM05D000530 ORTHO05D000621 8.4e-08 63.2 517 23.2
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 1.1e-07 62.8 403 21.1
Thhalv10011152m.g Eutrema salsugineum HOM05D001905 ORTHO05D001820 1.1e-07 62.8 131 33.6
FAN14G4647 Fragaria x ananassa HOM05D002125 ORTHO05D002105 1.1e-07 62.8 361 23.5
Thecc.06G037400 Theobroma cacao HOM05D001219 ORTHO05D001017 1.1e-07 62.8 455 22.4
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 1.4e-07 62.4 233 24.9
Dinv43661 Davidia involucrata HOM05D002503 ORTHO05D002810 1.4e-07 62.4 362 22.1
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 1.4e-07 62.4 233 25.3
FAN05G3110 Fragaria x ananassa HOM05D002125 ORTHO05D002105 1.4e-07 62.4 347 22.8
Glyma.02G232700 Glycine max HOM05D002125 ORTHO05D002105 1.4e-07 62.4 349 25.8
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 1.4e-07 62.4 210 28.1
FvH4_2g24840 Fragaria vesca HOM05D000530 ORTHO05D000621 1.9e-07 62.0 542 23.1
FAN24G0775 Fragaria x ananassa HOM05D000530 ORTHO05D000621 1.9e-07 62.0 542 23.1
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 1.9e-07 62.0 190 25.8
Nitab4.5_0000028g0350 Nicotiana tabacum HOM05D001818 ORTHO05D001780 1.9e-07 62.0 281 24.2
Nitab4.5_0000355g0180 Nicotiana tabacum HOM05D002125 ORTHO05D002105 1.9e-07 62.0 360 21.7
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 1.9e-07 62.0 231 25.1
AL1G53280 Arabidopsis lyrata HOM05D001905 ORTHO05D001820 2.4e-07 61.6 171 29.8
Migut.H01703 Erythranthe guttata HOM05D002887 ORTHO05D003159 2.4e-07 61.6 377 24.7
FvH4_6g10500 Fragaria vesca HOM05D002125 ORTHO05D002105 2.4e-07 61.6 361 23.3
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 2.4e-07 61.6 391 23.0
Mapoly0061s0105 Marchantia polymorpha HOM05D043561 ORTHO05D038408 2.4e-07 61.6 246 25.2
Mapoly0100s0050 Marchantia polymorpha HOM05D002813 ORTHO05D003203 2.4e-07 61.6 276 27.9
Rhsim06G0127300 Rhododendron simsii HOM05D001219 ORTHO05D001017 2.4e-07 61.6 415 23.1
Thecc.08G001200 Theobroma cacao HOM05D001905 ORTHO05D001820 2.4e-07 61.6 150 30.7
TAR628G1112 Trochodendron aralioides HOM05D001905 ORTHO05D001820 2.4e-07 61.6 131 34.4
TAR628G1366 Trochodendron aralioides HOM05D001905 ORTHO05D001820 2.4e-07 61.6 131 34.4
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 3.2e-07 61.2 233 25.3
MSTRG.15371 Avicennia marina HOM05D001905 ORTHO05D001820 3.2e-07 61.2 135 32.6
CARHR036670 Cardamine hirsuta HOM05D001905 ORTHO05D001820 3.2e-07 61.2 175 28.0
CDE06G2759 Ceratophyllum demersum HOM05D001818 ORTHO05D001780 3.2e-07 61.2 174 25.9
Haze_18070 Corylus avellana HOM05D001905 ORTHO05D001820 3.2e-07 61.2 171 31.0
QL02p088692 Quercus lobata HOM05D001818 ORTHO05D001780 3.2e-07 61.2 213 26.3
Rhsim07G0032400 Rhododendron simsii HOM05D002503 ORTHO05D002810 3.2e-07 61.2 330 23.3
SalBow4G2763 Salvia bowleyana HOM05D002125 ORTHO05D002105 3.2e-07 61.2 350 21.1
Sp5g12030 Schrenkiella parvula HOM05D001905 ORTHO05D001820 3.2e-07 61.2 131 32.1
BcaC05g27638 Brassica carinata HOM05D001905 ORTHO05D001820 4.2e-07 60.8 175 29.1
C05p36270 Brassica napus HOM05D001905 ORTHO05D001820 4.2e-07 60.8 175 29.1
CiPaw.13G068100 Carya illinoinensis HOM05D002125 ORTHO05D002105 4.2e-07 60.8 415 21.0
BcaB01g02512 Brassica carinata HOM05D000530 ORTHO05D000621 5.5e-07 60.5 562 23.7
Cfa018056 Carpinus fangiana HOM05D001905 ORTHO05D001820 5.5e-07 60.5 171 31.0
Ciclev10007739m.g Citrus clementina HOM05D001818 ORTHO05D001780 5.5e-07 60.5 202 28.7
Thhalv10003994m.g Eutrema salsugineum HOM05D001905 ORTHO05D001820 5.5e-07 60.5 131 32.8
Glyma.01G189600 Glycine max HOM05D001905 ORTHO05D001820 5.5e-07 60.5 345 24.1
Medtr1g023530 Medicago truncatula HOM05D001219 ORTHO05D001017 5.5e-07 60.5 132 29.5
Nitab4.5_0004209g0030 Nicotiana tabacum HOM05D001818 ORTHO05D001780 5.5e-07 60.5 281 23.8
Prupe.8G253300 Prunus persica HOM05D000530 ORTHO05D000621 5.5e-07 60.5 543 21.9
BolC3t16010H Brassica oleracea HOM05D000530 ORTHO05D000621 7.1e-07 60.1 540 23.1
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 7.1e-07 60.1 253 25.7
PGR004G0027 Punica granatum HOM05D002125 ORTHO05D002105 7.1e-07 60.1 182 27.5
Carub.0006s3387 Capsella rubella HOM05D000530 ORTHO05D000621 9.3e-07 59.7 523 23.9
FAN20G2014 Fragaria x ananassa HOM05D000530 ORTHO05D000621 9.3e-07 59.7 547 23.4
Sc02g0007530 Simmondsia chinensis HOM05D001905 ORTHO05D001820 9.3e-07 59.7 131 33.6
CAN.G1273.38 Capsicum annuum HOM05D002125 ORTHO05D002105 1.2e-06 59.3 252 24.2
CARHR280380 Cardamine hirsuta HOM05D001905 ORTHO05D001820 1.2e-06 59.3 131 32.8
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 1.2e-06 59.3 147 29.9
Ca_13256_v3 Cicer arietinum L. HOM05D001905 ORTHO05D001820 1.2e-06 59.3 145 31.0
COL.COLO4_08738 Corchorus olitorius HOM05D001219 ORTHO05D001017 1.2e-06 59.3 414 22.9
Hma1.2p1_0394F.1_g143320 Hydrangea macrophylla HOM05D001905 ORTHO05D001820 1.2e-06 59.3 111 34.2
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 1.2e-06 59.3 236 28.8
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-06 59.3 240 27.1
RcHm_v2.0_Chr3g0461461 Rosa chinensis HOM05D002125 ORTHO05D002105 1.2e-06 59.3 347 22.5
PGSC0003DMG400024768 Solanum tuberosum HOM05D002125 ORTHO05D002105 1.2e-06 59.3 251 24.3
Eucgr.A02899 Eucalyptus grandis HOM05D002503 ORTHO05D002810 1.6e-06 58.9 254 26.4
FvH4_1g16660 Fragaria vesca HOM05D001905 ORTHO05D001820 1.6e-06 58.9 131 33.6
FAN05G3214 Fragaria x ananassa HOM05D002125 ORTHO05D002105 1.6e-06 58.9 347 22.2
FAN19G0648 Fragaria x ananassa HOM05D001905 ORTHO05D001820 1.6e-06 58.9 131 33.6
FAN28G0354 Fragaria x ananassa HOM05D001905 ORTHO05D001820 1.6e-06 58.9 131 33.6
FAN28G1952 Fragaria x ananassa HOM05D001905 ORTHO05D001820 1.6e-06 58.9 131 33.6
SMO115G0078 Selaginella moellendorffii HOM05D001905 ORTHO05D001820 1.6e-06 58.9 171 29.8
COL.COLO4_08020 Corchorus olitorius HOM05D000530 ORTHO05D000621 2.1e-06 58.5 504 21.4
FAN02G2848 Fragaria x ananassa HOM05D002125 ORTHO05D002105 2.1e-06 58.5 347 21.9
Os04g0505700 Oryza sativa ssp. japonica HOM05D001905 ORTHO05D001820 2.1e-06 58.5 144 32.6
Aa31LG1G15780 Aethionema arabicum HOM05D001905 ORTHO05D001820 2.7e-06 58.2 131 32.1
Glyma.01G128200 Glycine max HOM05D002125 ORTHO05D002105 2.7e-06 58.2 344 23.8
Hma1.2p1_0511F.1_g169210 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 2.7e-06 58.2 251 28.3
FAN23G0703 Fragaria x ananassa HOM05D001905 ORTHO05D001820 3.5e-06 57.8 131 32.8
Lj4g0025766 Lotus japonicus HOM05D001905 ORTHO05D001820 3.5e-06 57.8 132 34.1
BraA04t17561Z Brassica rapa HOM05D001818 ORTHO05D001780 4.6e-06 57.4 246 23.6
COL.COLO4_11166 Corchorus olitorius HOM05D002125 ORTHO05D002105 4.6e-06 57.4 109 33.9
DCAR_003371 Daucus carota HOM05D000036 ORTHO05D002105 4.6e-06 57.4 127 29.9
Thhalv10011393m.g Eutrema salsugineum HOM05D001905 ORTHO05D001820 4.6e-06 57.4 136 31.6
Oeu014786.1 Olea europaea HOM05D001905 ORTHO05D001820 4.6e-06 57.4 190 27.4
Rhsim06G0054900 Rhododendron simsii HOM05D001905 ORTHO05D001820 4.6e-06 57.4 128 32.0
RcHm_v2.0_Chr6g0292661 Rosa chinensis HOM05D000530 ORTHO05D000621 4.6e-06 57.4 542 23.1
SalBow5G3486 Salvia bowleyana HOM05D001905 ORTHO05D001820 4.6e-06 57.4 171 30.4
SalBow5G5277 Salvia bowleyana HOM05D001905 ORTHO05D001820 4.6e-06 57.4 171 30.4
Sp2g29420 Schrenkiella parvula HOM05D001905 ORTHO05D001820 4.6e-06 57.4 156 30.1
THA.LOC104814076 Tarenaya hassleriana HOM05D002503 ORTHO05D002810 4.6e-06 57.4 178 30.3
TPR.G29719 Trifolium pratense HOM05D001219 ORTHO05D001017 4.6e-06 57.4 421 24.2
TWI12G1478 Tripterygium wilfordii HOM05D001219 ORTHO05D001017 4.6e-06 57.4 332 23.8
AL5G30200 Arabidopsis lyrata HOM05D001905 ORTHO05D001820 6.0e-06 57.0 131 31.3
CiPaw.03G245100 Carya illinoinensis HOM05D001818 ORTHO05D001780 6.0e-06 57.0 160 26.9
Glyma.17G167800 Glycine max HOM05D001905 ORTHO05D001820 6.0e-06 57.0 182 28.6
Lsat_1_v5_gn_1_22481 Lactuca sativa HOM05D001905 ORTHO05D001820 6.0e-06 57.0 179 27.9
Medtr3g465770 Medicago truncatula HOM05D001219 ORTHO05D001017 6.0e-06 57.0 300 23.7
Potri.002G143200 Populus trichocarpa HOM05D002503 ORTHO05D002810 6.0e-06 57.0 256 25.0
AL6G49750 Arabidopsis lyrata HOM05D000530 ORTHO05D000621 7.9e-06 56.6 523 22.9
arahy.Tifrunner.gnm1.ann1.MDG0XL Arachis hypogaea HOM05D001905 ORTHO05D001820 7.9e-06 56.6 373 21.2
A01p24280 Brassica napus HOM05D001905 ORTHO05D001820 7.9e-06 56.6 131 32.1
BraA01t02341Z Brassica rapa HOM05D001905 ORTHO05D001820 7.9e-06 56.6 131 32.1
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 7.9e-06 56.6 247 25.9
Dinv26860 Davidia involucrata HOM05D001905 ORTHO05D001820 7.9e-06 56.6 131 32.8
Potri.002G123100 Populus trichocarpa HOM05D001905 ORTHO05D001820 7.9e-06 56.6 171 28.7
Sp4g04780 Schrenkiella parvula HOM05D001818 ORTHO05D001780 7.9e-06 56.6 244 23.0
SEGI_04733 Sequoiadendron giganteum HOM05D001219 ORTHO05D001017 7.9e-06 56.6 422 21.6
SGA_v2.0_scaffold143G35793 Striga asiatica HOM05D001905 ORTHO05D001820 7.9e-06 56.6 132 33.3


User provided reference genes

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