Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_4880 Physcomitrium patens HOM05D007386 ORTHO05D009210 1.5e-77 293.1 182 100.0
MBI11_g22999_MAGBIO Magnolia biondii HOM05D007386 ORTHO05D009210 2.7e-23 112.8 146 48.6
MSTRG.21545 Avicennia marina HOM05D007386 ORTHO05D009210 6.0e-23 111.7 143 47.6
TWI18G1441 Tripterygium wilfordii HOM05D007386 ORTHO05D009210 2.3e-22 109.8 176 44.9
Glyma.02G145500 Glycine max HOM05D007386 ORTHO05D009210 3.0e-22 109.4 175 41.7
AUR62030273 Chenopodium quinoa HOM05D007386 ORTHO05D009210 8.7e-22 107.8 141 47.5
AUR62018389 Chenopodium quinoa HOM05D000027 ORTHO05D000066 1.5e-21 107.1 140 47.1
Glyma.10G028600 Glycine max HOM05D007386 ORTHO05D009210 1.5e-21 107.1 148 43.9
CDE06G2441 Ceratophyllum demersum HOM05D007386 ORTHO05D009210 2.5e-21 106.3 156 44.9
Nn6g34127 Nelumbo nucifera HOM05D007386 ORTHO05D009210 5.6e-21 105.1 188 43.6
ECA247G1531 Erigeron canadensis HOM05D007386 ORTHO05D009210 7.3e-21 104.8 141 45.4
Mapoly0035s0101 Marchantia polymorpha HOM05D007386 ORTHO05D009210 7.3e-21 104.8 194 41.8
SalBow4G1029 Salvia bowleyana HOM05D007386 ORTHO05D009210 7.3e-21 104.8 181 42.5
HPP92_020354 Vanilla planifolia HOM05D007386 ORTHO05D009210 7.3e-21 104.8 198 40.4
GSVIVG01001191001 Vitis vinifera HOM05D007386 ORTHO05D009210 7.3e-21 104.8 143 46.2
Gohir.A08G081100 Gossypium hirsutum HOM05D007386 ORTHO05D009210 9.6e-21 104.4 140 47.1
Oeu059791.1 Olea europaea HOM05D007386 ORTHO05D009210 1.3e-20 104.0 179 40.2
Duzib168G0678 Durio zibethinus HOM05D007386 ORTHO05D009210 1.6e-20 103.6 175 42.3
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 1.6e-20 103.6 191 41.9
Ah.04g150680 Amaranthus hybridus HOM05D007386 ORTHO05D009210 2.1e-20 103.2 141 46.8
PGR044G1958 Punica granatum HOM05D007386 ORTHO05D009210 2.8e-20 102.8 175 41.1
COL.COLO4_25451 Corchorus olitorius HOM05D007386 ORTHO05D009210 4.8e-20 102.1 156 43.6
Sc05g0001200 Simmondsia chinensis HOM05D007386 ORTHO05D009210 4.8e-20 102.1 177 42.4
Ca_09739_v3 Cicer arietinum L. HOM05D007386 ORTHO05D009210 6.2e-20 101.7 140 45.7
Phvul.007G173800 Phaseolus vulgaris HOM05D007386 ORTHO05D009210 6.2e-20 101.7 176 40.3
arahy.Tifrunner.gnm1.ann1.ZF8TUR Arachis hypogaea HOM05D007386 ORTHO05D009210 8.1e-20 101.3 140 45.0
EL10Ac3g07280 Beta vulgaris HOM05D007386 ORTHO05D009210 8.1e-20 101.3 168 41.1
Thecc.09G179900 Theobroma cacao HOM05D007386 ORTHO05D009210 8.1e-20 101.3 146 44.5
Medtr1g071630 Medicago truncatula HOM05D007386 ORTHO05D009210 1.4e-19 100.5 162 40.1
Rhsim13G0027600 Rhododendron simsii HOM05D007386 ORTHO05D009210 1.4e-19 100.5 197 40.6
VMungo0720G1463 Vigna mungo HOM05D007386 ORTHO05D009210 1.4e-19 100.5 176 40.3
vmacro02599 Vaccinium macrocarpon HOM05D007386 ORTHO05D009210 2.4e-19 99.8 156 42.3
HanXRQChr10g0282251 Helianthus annuus HOM05D007386 ORTHO05D009210 3.1e-19 99.4 180 41.1
Gohir.D08G093000 Gossypium hirsutum HOM05D007386 ORTHO05D009210 4.0e-19 99.0 175 41.7
Gorai.004G098600 Gossypium raimondii HOM05D007386 ORTHO05D009210 4.0e-19 99.0 175 41.7
Manes.05G078600 Manihot esculenta HOM05D007386 ORTHO05D009210 4.0e-19 99.0 175 39.4
Eucgr.K03341 Eucalyptus grandis HOM05D007386 ORTHO05D009210 5.3e-19 98.6 160 43.1
arahy.Tifrunner.gnm1.ann1.JNW8E7 Arachis hypogaea HOM05D007386 ORTHO05D009210 6.9e-19 98.2 140 44.3
Haze_04670 Corylus avellana HOM05D007386 ORTHO05D009210 9.0e-19 97.8 143 45.5
Potri.005G213000 Populus trichocarpa HOM05D007386 ORTHO05D009210 9.0e-19 97.8 150 44.7
Cc01_g19160 Coffea canephora HOM05D007386 ORTHO05D009210 1.2e-18 97.4 147 42.9
SMO351G0424 Selaginella moellendorffii HOM05D007386 ORTHO05D009210 1.2e-18 97.4 139 43.2
TPR.G25681 Trifolium pratense HOM05D007386 ORTHO05D009210 1.2e-18 97.4 140 42.9
DCAR_018437 Daucus carota HOM05D007386 ORTHO05D009210 2.6e-18 96.3 179 41.3
Migut.D00331 Erythranthe guttata HOM05D007386 ORTHO05D009210 3.4e-18 95.9 134 56.7
Cpa.g.sc95.34 Carica papaya HOM05D007386 ORTHO05D009210 4.5e-18 95.5 181 40.3
QL12p020752 Quercus lobata HOM05D007386 ORTHO05D009210 4.5e-18 95.5 177 42.9
Psat6g059880 Pisum sativum HOM05D007386 ORTHO05D009210 9.9e-18 94.4 134 43.3
Cfa006177 Carpinus fangiana HOM05D007386 ORTHO05D009210 1.7e-17 93.6 175 40.0
FAN15G1284 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.7e-17 93.6 135 45.9
Sabra05G0162700 Salix brachista HOM05D007386 ORTHO05D009210 1.7e-17 93.6 150 43.3
Lalb_Chr06g0162851 Lupinus albus HOM05D007386 ORTHO05D009210 2.2e-17 93.2 171 39.2
ATR0665G488 Amborella trichopoda HOM05D007386 ORTHO05D009210 4.9e-17 92.0 137 43.1
Prupe.8G236700 Prunus persica HOM05D007386 ORTHO05D009210 4.9e-17 92.0 142 41.5
Actinidia00789 Actinidia chinensis HOM05D007386 ORTHO05D009210 8.4e-17 91.3 183 39.3
CSS0002766 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 8.4e-17 91.3 175 41.1
CSS0036584 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 8.4e-17 91.3 178 38.2
AT4G04614 Arabidopsis thaliana HOM05D007386 ORTHO05D009210 3.2e-16 89.4 141 41.1
SGA_v2.0_scaffold1G00514 Striga asiatica HOM05D007386 ORTHO05D009210 3.2e-16 89.4 143 55.2
Lsat_1_v5_gn_9_6101 Lactuca sativa HOM05D007386 ORTHO05D009210 4.2e-16 89.0 141 44.7
unitig_0.g1138 Utricularia gibba HOM05D007386 ORTHO05D009210 4.2e-16 89.0 171 50.3
THA.LOC104813154 Tarenaya hassleriana HOM05D007386 ORTHO05D009210 7.1e-16 88.2 141 44.0
CANSAT78G1636 Cannabis sativa HOM05D007386 ORTHO05D009210 9.3e-16 87.8 175 38.3
Sp6g04310 Schrenkiella parvula HOM05D007386 ORTHO05D009210 1.2e-15 87.4 141 41.8
BcaB01g01820 Brassica carinata HOM05D007386 ORTHO05D009210 2.1e-15 86.7 141 41.1
BcaC04g21312 Brassica carinata HOM05D007386 ORTHO05D009210 2.7e-15 86.3 141 41.1
A09p26200 Brassica napus HOM05D007386 ORTHO05D009210 2.7e-15 86.3 141 41.1
C09p33290 Brassica napus HOM05D007386 ORTHO05D009210 2.7e-15 86.3 141 41.1
BolC9t56165H Brassica oleracea HOM05D007386 ORTHO05D009210 2.7e-15 86.3 141 41.1
BraA09t38188Z Brassica rapa HOM05D007386 ORTHO05D009210 2.7e-15 86.3 141 41.1
CARHR252930 Cardamine hirsuta HOM05D007386 ORTHO05D009210 4.6e-15 85.5 141 41.1
Aa31LG9G9760 Aethionema arabicum HOM05D000698 ORTHO05D009210 6.0e-15 85.1 140 42.9
CiPaw.07G088700 Carya illinoinensis HOM05D007386 ORTHO05D009210 1.0e-14 84.3 185 37.3
Carub.0006s3245 Capsella rubella HOM05D007386 ORTHO05D009210 1.8e-14 83.6 141 41.1
Lj5g0008996 Lotus japonicus HOM05D007386 ORTHO05D009210 2.3e-14 83.2 156 37.8
AL6G48080 Arabidopsis lyrata HOM05D007386 ORTHO05D009210 3.0e-14 82.8 141 41.1
Thhalv10029017m.g Eutrema salsugineum HOM05D007386 ORTHO05D009210 8.7e-14 81.3 141 40.4
Peaxi162Scf00230g01010 Petunia axillaris HOM05D007386 ORTHO05D009210 8.7e-14 81.3 148 48.6
Ciclev10022575m.g Citrus clementina HOM05D007386 ORTHO05D009210 1.5e-13 80.5 153 37.9
Dinv34778 Davidia involucrata HOM05D002659 ORTHO05D002940 1.5e-13 80.5 128 43.0
Nitab4.5_0009452g0010 Nicotiana tabacum HOM05D007386 ORTHO05D009210 7.4e-13 78.2 187 44.9
Atru.chr5.1489 Acer truncatum HOM05D007386 ORTHO05D009210 1.6e-12 77.0 155 39.4
Nitab4.5_0000252g0090 Nicotiana tabacum HOM05D007386 ORTHO05D009210 1.6e-12 77.0 184 45.7
FvH4_2g23140 Fragaria vesca HOM05D007386 ORTHO05D009210 2.8e-12 76.3 157 39.5
FAN24G1308 Fragaria x ananassa HOM05D007386 ORTHO05D009210 3.6e-12 75.9 148 39.2
Hund09518 Selenicereus undatus HOM05D007386 ORTHO05D009210 4.8e-12 75.5 167 36.5
PSO210G0643 Papaver somniferum HOM05D007386 ORTHO05D009210 6.2e-12 75.1 146 41.1
PSO832G2845 Papaver somniferum HOM05D007386 ORTHO05D009210 5.3e-11 72.0 147 39.5
FAN20G3170 Fragaria x ananassa HOM05D007386 ORTHO05D009210 2.0e-10 70.1 135 40.0
ClCG09G007290 Citrullus lanatus HOM05D007386 ORTHO05D009210 1.3e-09 67.4 183 32.2
MD03G1260500 Malus domestica HOM05D007386 ORTHO05D009210 1.3e-09 67.4 175 36.0
CsaV3_7G027780 Cucumis sativus L. HOM05D007386 ORTHO05D009210 2.9e-09 66.2 155 36.8
RcHm_v2.0_Chr6g0290391 Rosa chinensis HOM05D007386 ORTHO05D009210 2.9e-09 66.2 159 42.1
MD11G1280800 Malus domestica HOM05D007386 ORTHO05D009210 1.1e-08 64.3 173 39.9
SGA_v2.0_scaffold244G44361 Striga asiatica HOM05D007386 ORTHO05D009210 1.9e-08 63.5 53 66.0
MELO3C015793.2 Cucumis melo HOM05D007386 ORTHO05D009210 3.2e-08 62.8 189 30.7
FAN27G1502 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.6e-07 60.5 138 41.3
Sed0008482 Sechium edule HOM05D007386 ORTHO05D009210 1.6e-07 60.5 140 33.6
Os06g0630300 Oryza sativa ssp. japonica HOM05D007386 ORTHO05D009210 2.7e-07 59.7 189 42.9
Aqoxy5G00426 Aquilegia oxysepala HOM05D007386 ORTHO05D009210 3.5e-07 59.3 174 31.6
Solyc09g065510.3 Solanum lycopersicum HOM05D007386 ORTHO05D009210 6.0e-07 58.5 144 39.6
Sopen09g027270 Solanum pennellii HOM05D007386 ORTHO05D009210 6.0e-07 58.5 144 39.6
PGSC0003DMG400019353 Solanum tuberosum HOM05D007386 ORTHO05D009210 3.0e-06 56.2 144 38.9


User provided reference genes

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