Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 0.0e+00 1258.4 654 100.0
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.8e-186 656.8 663 56.9
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 7.3e-172 608.2 654 51.4
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 4.8e-155 552.4 659 49.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.2e-153 547.7 667 49.0
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 2.9e-152 543.1 656 47.4
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 2.5e-151 540.0 658 48.5
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.5e-151 538.9 658 47.9
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 9.3e-151 538.1 657 47.3
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 4.6e-150 535.8 659 47.3
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 7.9e-150 535.0 657 46.1
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.5e-148 530.8 673 46.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 5.7e-148 528.9 641 48.4
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.7e-148 528.1 663 46.8
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.7e-147 526.2 659 47.3
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 4.8e-147 525.8 662 47.0
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 6.3e-147 525.4 656 45.9
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 6.3e-147 525.4 659 47.2
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 8.2e-147 525.0 646 47.5
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-146 524.6 657 46.1
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.8e-146 523.9 665 45.1
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.8e-146 523.9 658 47.3
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 2.4e-146 523.5 669 46.2
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 2.4e-146 523.5 658 46.7
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 5.3e-146 522.3 661 46.6
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 5.3e-146 522.3 647 46.8
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.2e-145 521.2 657 46.0
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.0e-145 520.4 667 46.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 2.6e-145 520.0 659 46.6
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 3.4e-145 519.6 671 45.3
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 5.9e-145 518.8 647 47.9
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 5.9e-145 518.8 670 45.5
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 5.9e-145 518.8 635 48.0
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.2e-144 516.9 675 45.0
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 2.9e-144 516.5 667 45.4
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 2.9e-144 516.5 670 45.7
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 3.8e-144 516.2 668 44.9
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 3.8e-144 516.2 669 45.7
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 6.5e-144 515.4 682 45.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.1e-143 514.6 675 43.9
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 7.2e-143 511.9 665 46.0
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 7.2e-143 511.9 665 46.0
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 7.2e-143 511.9 669 45.4
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.6e-142 510.8 659 46.7
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.6e-142 510.8 672 45.1
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 2.1e-142 510.4 666 44.9
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 2.1e-142 510.4 666 44.9
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 2.7e-142 510.0 671 44.3
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 2.7e-142 510.0 670 45.8
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 3.6e-142 509.6 672 44.9
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 3.6e-142 509.6 670 45.1
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 4.6e-142 509.2 670 44.5
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 7.9e-142 508.4 653 44.6
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.0e-141 508.1 663 44.5
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.3e-141 507.7 650 45.8
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.3e-141 507.7 647 47.6
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.8e-141 507.3 672 44.9
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.8e-141 507.3 670 44.3
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 2.3e-141 506.9 674 44.5
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 2.3e-141 506.9 645 46.7
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 3.9e-141 506.1 674 44.7
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 6.7e-141 505.4 674 44.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 6.7e-141 505.4 666 45.2
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 6.7e-141 505.4 669 45.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 6.7e-141 505.4 668 44.2
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 8.8e-141 505.0 647 47.8
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 8.8e-141 505.0 673 45.0
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.1e-140 504.6 666 44.4
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.5e-140 504.2 658 45.9
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.5e-140 503.4 655 45.2
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 5.7e-140 502.3 672 44.0
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 2.8e-139 500.0 664 45.0
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 3.7e-139 499.6 674 43.8
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 3.7e-139 499.6 675 43.4
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 4.8e-139 499.2 670 44.3
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 8.2e-139 498.4 665 43.2
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.8e-138 497.3 676 43.8
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 4.1e-138 496.1 665 45.1
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 6.9e-138 495.4 660 45.2
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.5e-137 494.2 668 44.5
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.6e-137 493.4 680 43.5
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 4.5e-137 492.7 676 43.2
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 5.9e-137 492.3 676 43.5
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 5.9e-137 492.3 677 43.1
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 7.7e-137 491.9 659 45.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 1.3e-136 491.1 682 43.7
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 1.3e-136 491.1 679 43.4
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 1.3e-136 491.1 685 43.2
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.7e-136 490.7 677 43.4
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 2.2e-136 490.3 678 44.0
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 2.2e-136 490.3 674 43.8
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.9e-136 490.0 676 43.3
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 3.8e-136 489.6 680 43.5
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 8.5e-136 488.4 676 43.3
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 8.5e-136 488.4 678 43.2
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-135 488.0 682 43.4
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.4e-135 487.6 672 44.2
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.9e-135 487.3 654 44.5
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.2e-135 486.5 663 45.1
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-133 481.1 677 43.0
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.4e-133 481.1 666 42.6
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.4e-133 481.1 665 43.9
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 5.7e-132 475.7 660 43.6
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.7e-131 473.0 668 43.9
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 6.3e-131 472.2 672 42.9
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 3.1e-130 469.9 680 42.6
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 6.9e-130 468.8 667 43.9
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.0e-128 464.9 658 42.1
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.6e-126 457.6 614 44.8
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.0e-125 454.9 670 41.6
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.4e-124 448.7 667 42.0
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.4e-124 448.7 667 42.1
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 1.7e-123 447.6 601 44.6
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 7.0e-122 442.2 601 44.6
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 5.0e-120 436.0 635 44.7
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.6e-118 429.9 651 43.0
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.6e-116 423.7 547 46.4
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.0e-113 414.1 664 39.8
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 3.1e-106 390.2 384 59.4
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.8e-101 374.4 657 38.2
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.2e-99 367.5 558 41.4
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 6.6e-96 355.9 657 37.1
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.6e-94 351.3 579 39.6
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 2.2e-91 340.9 635 37.5
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 2.6e-76 290.8 323 50.2
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-74 285.4 646 34.1
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 2.1e-46 191.4 570 30.2
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.6e-41 175.3 400 33.2
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 1.4e-37 162.2 245 36.3
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 5.8e-36 156.8 309 35.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.4e-29 134.8 113 58.4
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.0e-16 91.3 135 41.5
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.7e-14 85.5 99 53.5


User provided reference genes

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