Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_3920 Physcomitrium patens HOM05D010122 ORTHO05D000399 1.1e-72 276.6 139 100.0
TWI14G0439 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 6.4e-09 64.7 83 45.8
BolC2t06159H Brassica oleracea HOM05D000262 ORTHO05D000399 1.1e-08 63.9 85 40.0
Mapoly0025s0037 Marchantia polymorpha HOM05D025773 ORTHO05D000300 3.2e-08 62.4 63 44.4
Mapoly0180s0015 Marchantia polymorpha HOM05D010122 ORTHO05D013334 5.4e-08 61.6 82 37.8
Mapoly0180s0017 Marchantia polymorpha HOM05D010122 ORTHO05D013334 5.4e-08 61.6 82 37.8
Mapoly0180s0021 Marchantia polymorpha HOM05D010122 ORTHO05D013334 9.3e-08 60.8 111 33.3
Mapoly0180s0014 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.2e-07 60.5 111 33.3
Mapoly0180s0012 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.6e-07 60.1 111 34.2
Rhsim05G0141100 Rhododendron simsii HOM05D000520 ORTHO05D000399 1.6e-07 60.1 66 43.9
Mapoly0023s0034 Marchantia polymorpha HOM05D000262 ORTHO05D000399 2.1e-07 59.7 67 41.8
Pp3c18_18100 Physcomitrium patens HOM05D000262 ORTHO05D000300 2.1e-07 59.7 67 43.3
Zm00001eb125730 Zea mays HOM05D000520 ORTHO05D006660 2.1e-07 59.7 101 35.6
Cpa.g.sc48.88 Carica papaya HOM05D000520 ORTHO05D000399 3.5e-07 58.9 63 46.0
MBI04_g07881_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D005718 3.5e-07 58.9 82 40.2
Mapoly0180s0018 Marchantia polymorpha HOM05D010122 ORTHO05D013334 3.5e-07 58.9 111 32.4
Rhsim01G0283400 Rhododendron simsii HOM05D000520 ORTHO05D000399 3.5e-07 58.9 64 45.3
RcHm_v2.0_Chr6g0293381 Rosa chinensis HOM05D000520 ORTHO05D000399 3.5e-07 58.9 89 41.6
Hund21707 Selenicereus undatus HOM05D000520 ORTHO05D000399 3.5e-07 58.9 65 49.2
vmacro14992 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 3.5e-07 58.9 64 45.3
GSVIVG01027966001 Vitis vinifera HOM05D000520 ORTHO05D000399 3.5e-07 58.9 88 42.0
ATR0820G008 Amborella trichopoda HOM05D000262 ORTHO05D000399 4.6e-07 58.5 67 43.3
AT1G66240 Arabidopsis thaliana HOM05D000262 ORTHO05D000399 4.6e-07 58.5 76 42.1
Gorai.011G230400 Gossypium raimondii HOM05D000262 ORTHO05D000399 4.6e-07 58.5 68 44.1
Mapoly0180s0019 Marchantia polymorpha HOM05D010122 ORTHO05D013334 4.6e-07 58.5 111 30.6
HPP92_022293 Vanilla planifolia HOM05D000262 ORTHO05D005718 4.6e-07 58.5 111 33.3
Zm00001eb111160 Zea mays HOM05D000520 ORTHO05D000399 4.6e-07 58.5 61 45.9
Aqoxy2G03000 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 6.0e-07 58.2 65 46.2
Mapoly0028s0146 Marchantia polymorpha HOM05D010122 ORTHO05D013334 6.0e-07 58.2 65 43.1
Phvul.009G247600 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 6.0e-07 58.2 80 41.2
QL12p026987 Quercus lobata HOM05D000520 ORTHO05D000399 6.0e-07 58.2 78 42.3
vmacro10296 Vaccinium macrocarpon HOM05D000262 ORTHO05D000399 6.0e-07 58.2 63 44.4
Carub.0002s1223 Capsella rubella HOM05D000262 ORTHO05D000399 7.9e-07 57.8 67 41.8
Dinv33031 Davidia involucrata HOM05D000520 ORTHO05D000399 7.9e-07 57.8 63 44.4
FAN04G2412 Fragaria x ananassa HOM05D000262 ORTHO05D005718 7.9e-07 57.8 65 43.1
Hma1.2p1_2670F.1_g326640 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 7.9e-07 57.8 84 40.5
GSVIVG01034760001 Vitis vinifera HOM05D000262 ORTHO05D000399 7.9e-07 57.8 77 42.9
Atru.chr12.991 Acer truncatum HOM05D000262 ORTHO05D000399 1.0e-06 57.4 65 41.5
Ciclev10002978m.g Citrus clementina HOM05D000262 ORTHO05D000399 1.0e-06 57.4 65 41.5
Cc03_g13800 Coffea canephora HOM05D000101 ORTHO05D003282 1.0e-06 57.4 93 37.6
Dinv29767 Davidia involucrata HOM05D000520 ORTHO05D000399 1.0e-06 57.4 84 40.5
FvH4_5g10380 Fragaria vesca HOM05D000262 ORTHO05D005718 1.0e-06 57.4 65 43.1
FAN18G1562 Fragaria x ananassa HOM05D000262 ORTHO05D005718 1.0e-06 57.4 65 43.1
Lj2g0012813 Lotus japonicus HOM05D000262 ORTHO05D000300 1.0e-06 57.4 75 41.3
Mapoly0026s0123 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.0e-06 57.4 65 40.0
Os01g0125600 Oryza sativa ssp. japonica HOM05D000520 ORTHO05D006660 1.0e-06 57.4 78 37.2
Pp3c19_4310 Physcomitrium patens HOM05D000262 ORTHO05D000300 1.0e-06 57.4 82 39.0
Pp3c19_4313 Physcomitrium patens HOM05D000262 ORTHO05D000300 1.0e-06 57.4 82 39.0
Pp3c25_11290 Physcomitrium patens HOM05D011764 ORTHO05D017075 1.0e-06 57.4 63 46.0
TWI12G0219 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.0e-06 57.4 63 44.4
CANSAT54G1029 Cannabis sativa HOM05D000520 ORTHO05D000399 1.3e-06 57.0 121 36.4
PGR044G1282 Punica granatum HOM05D000262 ORTHO05D000399 1.3e-06 57.0 63 44.4
RcHm_v2.0_Chr7g0187841 Rosa chinensis HOM05D000262 ORTHO05D005718 1.3e-06 57.0 63 44.4
Sed0019146 Sechium edule HOM05D000262 ORTHO05D000300 1.3e-06 57.0 75 44.0
THA.LOC104823187 Tarenaya hassleriana HOM05D000262 ORTHO05D000399 1.3e-06 57.0 71 42.3
TPR.G13851 Trifolium pratense HOM05D000520 ORTHO05D000399 1.3e-06 57.0 83 41.0
TAR628G0665 Trochodendron aralioides HOM05D000262 ORTHO05D000300 1.3e-06 57.0 74 43.2
Actinidia21058 Actinidia chinensis HOM05D000520 ORTHO05D000399 1.7e-06 56.6 63 46.0
ATR0579G030 Amborella trichopoda HOM05D000262 ORTHO05D005718 1.7e-06 56.6 63 47.6
Ciclev10002981m.g Citrus clementina HOM05D000262 ORTHO05D000399 1.7e-06 56.6 65 41.5
Cc02_g33120 Coffea canephora HOM05D000520 ORTHO05D000399 1.7e-06 56.6 104 36.5
COL.COLO4_27232 Corchorus olitorius HOM05D000262 ORTHO05D000399 1.7e-06 56.6 63 44.4
Duzib264G0478 Durio zibethinus HOM05D000262 ORTHO05D000300 1.7e-06 56.6 74 43.2
MD03G1102100 Malus domestica HOM05D000999 ORTHO05D000961 1.7e-06 56.6 63 47.6
Phvul.007G103800 Phaseolus vulgaris HOM05D000262 ORTHO05D000399 1.7e-06 56.6 63 44.4
Hund06774 Selenicereus undatus HOM05D000999 ORTHO05D000399 1.7e-06 56.6 66 40.9
TPR.G39802 Trifolium pratense HOM05D000520 ORTHO05D000399 1.7e-06 56.6 65 41.5
TWI15G0264 Tripterygium wilfordii HOM05D000262 ORTHO05D000399 1.7e-06 56.6 63 44.4
TWI59G1036 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.7e-06 56.6 94 39.4
HPP92_018390 Vanilla planifolia HOM05D000520 ORTHO05D000399 1.7e-06 56.6 85 40.0
Actinidia40258 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.3e-06 56.2 76 38.2
MSTRG.9104 Avicennia marina HOM05D000262 ORTHO05D000399 2.3e-06 56.2 67 40.3
CDE11G0338 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 2.3e-06 56.2 94 40.4
Ca_17711_v3 Cicer arietinum L. HOM05D000262 ORTHO05D000300 2.3e-06 56.2 87 36.8
Eucgr.G02703 Eucalyptus grandis HOM05D000262 ORTHO05D000399 2.3e-06 56.2 67 44.8
Gohir.A01G129800 Gossypium hirsutum HOM05D000262 ORTHO05D000399 2.3e-06 56.2 63 46.0
Lj6g0005585 Lotus japonicus HOM05D000520 ORTHO05D000399 2.3e-06 56.2 86 38.4
Pp3c3_8280 Physcomitrium patens HOM05D010122 ORTHO05D013334 2.3e-06 56.2 63 42.9
Pp3c4_22810 Physcomitrium patens HOM05D061274 ORTHO05D013334 2.3e-06 56.2 64 45.3
Sp6g38130 Schrenkiella parvula HOM05D000262 ORTHO05D000399 2.3e-06 56.2 67 43.3
Sed0012204 Sechium edule HOM05D000262 ORTHO05D000300 2.3e-06 56.2 75 42.7
SEGI_17029 Sequoiadendron giganteum HOM05D000520 ORTHO05D000399 2.3e-06 56.2 83 41.0
Thecc.08G113100 Theobroma cacao HOM05D000262 ORTHO05D000300 2.3e-06 56.2 72 40.3
Thecc.10G101900 Theobroma cacao HOM05D000262 ORTHO05D000399 2.3e-06 56.2 63 44.4
BcaC05g29446 Brassica carinata HOM05D000262 ORTHO05D000399 3.0e-06 55.8 63 42.9
MELO3C006660.2 Cucumis melo HOM05D000520 ORTHO05D000399 3.0e-06 55.8 67 40.3
CsaV3_3G014590 Cucumis sativus L. HOM05D000520 ORTHO05D000399 3.0e-06 55.8 67 40.3
Lalb_Chr06g0170191 Lupinus albus HOM05D000262 ORTHO05D000399 3.0e-06 55.8 63 44.4
Medtr2g022240 Medicago truncatula HOM05D000520 ORTHO05D000399 3.0e-06 55.8 61 44.3
Phvul.002G262500 Phaseolus vulgaris HOM05D000262 ORTHO05D000300 3.0e-06 55.8 87 37.9
Hund17521 Selenicereus undatus HOM05D000262 ORTHO05D000300 3.0e-06 55.8 72 41.7
Sc16g0008600 Simmondsia chinensis HOM05D000520 ORTHO05D000399 3.0e-06 55.8 63 46.0
HPP92_017218 Vanilla planifolia HOM05D000668 ORTHO05D000399 3.0e-06 55.8 87 39.1
Zm00001eb334940 Zea mays HOM05D000520 ORTHO05D006660 3.0e-06 55.8 67 38.8
arahy.Tifrunner.gnm1.ann1.EE5UNB Arachis hypogaea HOM05D000262 ORTHO05D000399 3.9e-06 55.5 63 42.9
arahy.Tifrunner.gnm1.ann1.MC15QU Arachis hypogaea HOM05D000520 ORTHO05D000399 3.9e-06 55.5 85 37.6
arahy.Tifrunner.gnm1.ann1.RLCT0M Arachis hypogaea HOM05D000262 ORTHO05D000399 3.9e-06 55.5 63 42.9
CSS0021736 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 3.9e-06 55.5 63 46.0
CSS0045116 Camellia sinensis var. sinensis HOM05D000262 ORTHO05D000399 3.9e-06 55.5 71 42.3
ClCG05G010850 Citrullus lanatus HOM05D000520 ORTHO05D000399 3.9e-06 55.5 65 43.1
COL.COLO4_08827 Corchorus olitorius HOM05D000262 ORTHO05D000399 3.9e-06 55.5 63 46.0
Duzib147G0541 Durio zibethinus HOM05D000262 ORTHO05D000300 3.9e-06 55.5 80 40.0
FAN02G0264 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.9e-06 55.5 77 39.0
FAN05G0808 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.9e-06 55.5 77 39.0
FAN05G4392 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.9e-06 55.5 77 39.0
FAN09G4603 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.9e-06 55.5 77 39.0
MD06G1124600 Malus domestica HOM05D000262 ORTHO05D005718 3.9e-06 55.5 63 42.9
MD11G1304000 Malus domestica HOM05D000520 ORTHO05D000399 3.9e-06 55.5 71 42.3
Phvul.001G250300 Phaseolus vulgaris HOM05D000262 ORTHO05D000300 3.9e-06 55.5 63 47.6
Pp3c22_16710 Physcomitrium patens HOM05D011764 ORTHO05D308383 3.9e-06 55.5 64 42.2
Psat7g053160 Pisum sativum HOM05D000262 ORTHO05D000300 3.9e-06 55.5 84 38.1
AL2G23950 Arabidopsis lyrata HOM05D000262 ORTHO05D000399 5.1e-06 55.1 68 42.6
arahy.Tifrunner.gnm1.ann1.Z22JU0 Arachis hypogaea HOM05D000520 ORTHO05D000399 5.1e-06 55.1 83 37.3
Eucgr.G03105 Eucalyptus grandis HOM05D000520 ORTHO05D000399 5.1e-06 55.1 63 42.9
FAN08G1867 Fragaria x ananassa HOM05D000262 ORTHO05D005718 5.1e-06 55.1 63 42.9
FAN10G2014 Fragaria x ananassa HOM05D000520 ORTHO05D000399 5.1e-06 55.1 66 43.9
Gohir.A10G198300 Gossypium hirsutum HOM05D000262 ORTHO05D000399 5.1e-06 55.1 63 44.4
Gohir.D01G119100 Gossypium hirsutum HOM05D000262 ORTHO05D000399 5.1e-06 55.1 63 44.4
Gorai.002G145400 Gossypium raimondii HOM05D000262 ORTHO05D000399 5.1e-06 55.1 63 44.4
MBI19_g29233_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 5.1e-06 55.1 63 42.9
Manes.01G216400 Manihot esculenta HOM05D000520 ORTHO05D000399 5.1e-06 55.1 63 49.2
Mapoly0058s0015 Marchantia polymorpha HOM05D000262 ORTHO05D000399 5.1e-06 55.1 66 43.9
Mapoly0168s0010 Marchantia polymorpha HOM05D015359 ORTHO05D000300 5.1e-06 55.1 79 39.2
Nn2g10519 Nelumbo nucifera HOM05D000999 ORTHO05D000961 5.1e-06 55.1 102 34.3
Os08g0205400 Oryza sativa ssp. japonica HOM05D000999 ORTHO05D000399 5.1e-06 55.1 67 44.8
PSO210G4601 Papaver somniferum HOM05D000520 ORTHO05D000399 5.1e-06 55.1 61 45.9
Prupe.6G179300 Prunus persica HOM05D000262 ORTHO05D000300 5.1e-06 55.1 80 40.0
Sabra14G0098100 Salix brachista HOM05D000520 ORTHO05D000399 5.1e-06 55.1 78 44.9
SalBow2G0691 Salvia bowleyana HOM05D000520 ORTHO05D000399 5.1e-06 55.1 82 37.8
Sed0027677 Sechium edule HOM05D000520 ORTHO05D000399 5.1e-06 55.1 62 41.9
SMO164G0017 Selaginella moellendorffii HOM05D000262 ORTHO05D000399 5.1e-06 55.1 67 43.3
Solyc05g055310.3 Solanum lycopersicum HOM05D000262 ORTHO05D000399 5.1e-06 55.1 67 41.8
Sopen05g033750 Solanum pennellii HOM05D000262 ORTHO05D000399 5.1e-06 55.1 67 41.8
PGSC0003DMG400023492 Solanum tuberosum HOM05D000262 ORTHO05D000399 5.1e-06 55.1 67 41.8
unitig_62.g23262 Utricularia gibba HOM05D000262 ORTHO05D005718 5.1e-06 55.1 63 49.2
HPP92_027256 Vanilla planifolia HOM05D000262 ORTHO05D000300 5.1e-06 55.1 75 41.3
Zm00001eb032340 Zea mays HOM05D000999 ORTHO05D000399 5.1e-06 55.1 63 44.4
Atru.chr5.1202 Acer truncatum HOM05D000520 ORTHO05D000399 6.6e-06 54.7 88 40.9
Cc00_g13310 Coffea canephora HOM05D000520 ORTHO05D000399 6.6e-06 54.7 105 33.3
DCAR_006348 Daucus carota HOM05D000262 ORTHO05D000399 6.6e-06 54.7 71 39.4
Glyma.18G019300 Glycine max HOM05D000262 ORTHO05D000300 6.6e-06 54.7 63 47.6
Gohir.A05G398400 Gossypium hirsutum HOM05D000262 ORTHO05D000399 6.6e-06 54.7 63 42.9
Gohir.D04G017600 Gossypium hirsutum HOM05D000262 ORTHO05D000399 6.6e-06 54.7 63 42.9
Gohir.D10G205400 Gossypium hirsutum HOM05D000262 ORTHO05D000399 6.6e-06 54.7 63 44.4
Gorai.012G020400 Gossypium raimondii HOM05D000262 ORTHO05D000399 6.6e-06 54.7 63 42.9
HanXRQChr12g0359381 Helianthus annuus HOM05D000520 ORTHO05D000399 6.6e-06 54.7 65 43.1
Manes.08G118400 Manihot esculenta HOM05D000520 ORTHO05D000399 6.6e-06 54.7 63 44.4
Medtr1g092670 Medicago truncatula HOM05D000262 ORTHO05D000399 6.6e-06 54.7 63 44.4
Nn2g14076 Nelumbo nucifera HOM05D000262 ORTHO05D000399 6.6e-06 54.7 65 41.5
Nitab4.5_0000214g0130 Nicotiana tabacum HOM05D000262 ORTHO05D000300 6.6e-06 54.7 72 43.1
Nitab4.5_0000518g0070 Nicotiana tabacum HOM05D000262 ORTHO05D000300 6.6e-06 54.7 72 43.1
PSO063G5114 Papaver somniferum HOM05D000262 ORTHO05D005718 6.6e-06 54.7 65 44.6
Pp3c20_18320 Physcomitrium patens HOM05D011764 ORTHO05D308574 6.6e-06 54.7 89 33.7
Rhsim09G0143200 Rhododendron simsii HOM05D000262 ORTHO05D000399 6.6e-06 54.7 77 41.6
SalBow6G6033 Salvia bowleyana HOM05D000262 ORTHO05D000399 6.6e-06 54.7 63 42.9
SEGI_07017 Sequoiadendron giganteum HOM05D000520 ORTHO05D000399 6.6e-06 54.7 88 38.6
THA.LOC104824863 Tarenaya hassleriana HOM05D000262 ORTHO05D000300 6.6e-06 54.7 74 43.2
Actinidia34715 Actinidia chinensis HOM05D000262 ORTHO05D000399 8.7e-06 54.3 63 39.7
Aa31LG10G11750 Aethionema arabicum HOM05D000262 ORTHO05D000300 8.7e-06 54.3 63 42.9
Aa31LG3G3450 Aethionema arabicum HOM05D000262 ORTHO05D000399 8.7e-06 54.3 68 42.6
Ah.04g159770 Amaranthus hybridus HOM05D000520 ORTHO05D000399 8.7e-06 54.3 68 42.6
ATR0796G208 Amborella trichopoda HOM05D000520 ORTHO05D000399 8.7e-06 54.3 83 43.4
AL5G38290 Arabidopsis lyrata HOM05D000262 ORTHO05D000300 8.7e-06 54.3 63 46.0
Cpa.g.sc19.110 Carica papaya HOM05D000520 ORTHO05D000399 8.7e-06 54.3 67 40.3
CiPaw.13G038200 Carya illinoinensis HOM05D000262 ORTHO05D000399 8.7e-06 54.3 67 40.3
AUR62007086 Chenopodium quinoa HOM05D000262 ORTHO05D005718 8.7e-06 54.3 63 46.0
AUR62019949 Chenopodium quinoa HOM05D000262 ORTHO05D005718 8.7e-06 54.3 63 46.0
Ca_05804_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 8.7e-06 54.3 63 39.7
Ca_10504_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 8.7e-06 54.3 63 44.4
MELO3C012358.2 Cucumis melo HOM05D000262 ORTHO05D000399 8.7e-06 54.3 80 35.0
Migut.F00902 Erythranthe guttata HOM05D000262 ORTHO05D000399 8.7e-06 54.3 64 40.6
FvH4_3g34750 Fragaria vesca HOM05D000999 ORTHO05D000961 8.7e-06 54.3 70 40.0
FAN21G1712 Fragaria x ananassa HOM05D000999 ORTHO05D000961 8.7e-06 54.3 70 40.0
Hma1.2p1_1292F.1_g273650 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 8.7e-06 54.3 63 42.9
Hma1.2p1_1374F.1_g278785 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 8.7e-06 54.3 63 42.9
Lj9A142G3 Lonicera japonica HOM05D000520 ORTHO05D000399 8.7e-06 54.3 83 42.2
Lalb_Chr21g0313281 Lupinus albus HOM05D000262 ORTHO05D000399 8.7e-06 54.3 73 41.1
Manes.07G089100 Manihot esculenta HOM05D000262 ORTHO05D000399 8.7e-06 54.3 63 41.3
Manes.09G169700 Manihot esculenta HOM05D000520 ORTHO05D000399 8.7e-06 54.3 63 42.9
PSO832G0244 Papaver somniferum HOM05D000520 ORTHO05D000399 8.7e-06 54.3 61 45.9
Pp3c24_5200 Physcomitrium patens HOM05D011764 ORTHO05D318183 8.7e-06 54.3 100 28.0
Psat6g177480 Pisum sativum HOM05D000262 ORTHO05D000399 8.7e-06 54.3 63 44.4
Rhsim09G0099500 Rhododendron simsii HOM05D000262 ORTHO05D000300 8.7e-06 54.3 63 47.6
RcHm_v2.0_Chr5g0062481 Rosa chinensis HOM05D000999 ORTHO05D000961 8.7e-06 54.3 70 40.0
Sp3g08880 Schrenkiella parvula HOM05D000262 ORTHO05D000399 8.7e-06 54.3 63 41.3


User provided reference genes

Program Settings