Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.1e-119 433.3 222 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.5e-76 290.0 219 63.9
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.7e-75 285.4 219 64.4
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.4e-74 283.5 219 64.8
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.4e-74 282.7 218 63.3
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 7.0e-74 281.2 218 60.1
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 9.1e-74 280.8 218 63.3
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.5e-71 273.5 218 58.7
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.9e-71 273.1 217 60.4
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.9e-71 273.1 217 60.8
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 2.5e-71 272.7 218 58.7
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 4.2e-71 271.9 221 59.7
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 9.4e-71 270.8 221 60.6
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.2e-70 270.4 220 58.6
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.6e-70 270.0 220 59.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-70 270.0 224 59.4
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 3.6e-70 268.9 227 57.7
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 4.7e-70 268.5 220 60.0
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.1e-70 268.1 221 58.4
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 6.1e-70 268.1 217 56.2
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 8.0e-70 267.7 217 58.5
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 8.0e-70 267.7 224 58.5
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.4e-69 266.9 219 58.9
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.4e-69 266.9 218 58.3
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.4e-69 266.9 217 60.4
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.8e-69 266.5 225 57.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.8e-69 266.5 218 59.6
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.8e-69 266.5 224 58.5
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 2.3e-69 266.2 219 58.4
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 2.3e-69 266.2 221 58.8
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.3e-69 266.2 217 57.1
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.3e-69 266.2 219 58.4
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.0e-69 265.8 218 59.2
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.0e-69 265.8 219 56.6
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.0e-69 265.8 219 56.6
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 3.0e-69 265.8 221 59.7
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 4.0e-69 265.4 218 58.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 5.2e-69 265.0 218 57.3
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 5.2e-69 265.0 218 57.3
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.2e-69 265.0 218 59.2
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 5.2e-69 265.0 224 57.1
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 5.2e-69 265.0 220 58.6
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 5.2e-69 265.0 218 56.0
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 6.8e-69 264.6 221 57.9
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 6.8e-69 264.6 222 57.2
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 8.8e-69 264.2 219 59.4
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 8.8e-69 264.2 221 58.8
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 8.8e-69 264.2 221 58.4
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 8.8e-69 264.2 221 58.8
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 8.8e-69 264.2 218 59.2
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.2e-68 263.8 219 58.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.2e-68 263.8 221 58.4
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.5e-68 263.5 220 57.3
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-68 263.5 218 59.2
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.5e-68 263.5 218 58.7
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 2.0e-68 263.1 218 57.3
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.0e-68 263.1 218 56.4
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.6e-68 262.7 223 57.4
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.6e-68 262.7 218 58.3
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 3.4e-68 262.3 218 56.9
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 3.4e-68 262.3 218 58.7
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 4.4e-68 261.9 217 58.1
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 7.5e-68 261.2 220 58.6
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 9.8e-68 260.8 218 55.5
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.3e-67 260.4 220 56.4
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.3e-67 260.4 219 55.7
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.7e-67 260.0 222 56.8
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.7e-67 260.0 217 57.6
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.7e-67 260.0 218 57.3
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.2e-67 259.6 222 56.8
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.2e-67 259.6 222 58.1
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.8e-67 259.2 218 56.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.8e-67 259.2 219 57.1
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.8e-67 259.2 219 58.0
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 2.8e-67 259.2 219 55.7
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.7e-67 258.8 223 56.1
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 3.7e-67 258.8 218 56.9
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.7e-67 258.8 219 55.3
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 3.7e-67 258.8 218 57.3
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 4.8e-67 258.5 217 56.7
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 4.8e-67 258.5 224 54.9
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.3e-67 258.1 221 57.5
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.4e-66 256.1 219 57.5
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 5.4e-66 255.0 224 54.0
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 7.0e-66 254.6 218 56.4
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 7.0e-66 254.6 209 57.4
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 9.1e-66 254.2 218 56.9
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.2e-65 253.8 213 54.9
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.2e-65 253.8 222 56.3
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.2e-65 253.8 220 57.7
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.6e-65 253.4 218 57.8
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.0e-65 253.1 223 56.5
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 2.7e-65 252.7 219 56.6
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.5e-65 251.9 218 56.4
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.9e-65 251.5 220 55.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 7.7e-65 251.1 207 56.5
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.0e-64 250.8 218 56.9
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.0e-64 250.8 210 58.1
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.0e-64 250.8 221 53.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.3e-64 250.4 230 53.0
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.3e-64 250.4 213 58.2
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 1.7e-64 250.0 229 54.6
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.7e-64 250.0 222 53.6
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.7e-64 250.0 225 55.1
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.7e-64 250.0 225 55.1
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.0e-64 248.4 215 56.3
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 5.0e-64 248.4 213 56.8
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 5.0e-64 248.4 217 56.2
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 6.5e-64 248.1 244 52.5
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.5e-64 248.1 215 55.8
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.1e-63 247.3 211 56.9
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 1.9e-63 246.5 216 56.9
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.2e-63 245.4 213 56.3
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 7.2e-63 244.6 217 55.3
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.2e-62 243.8 213 55.9
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.0e-60 236.5 220 55.0
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 3.7e-59 232.3 309 43.0
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.1e-58 230.7 220 52.3
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.2e-57 227.3 319 40.4
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.2e-57 227.3 220 53.6
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 7.7e-57 224.6 219 53.0
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 7.5e-52 208.0 351 35.3
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 9.8e-52 207.6 151 65.6
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.8e-50 203.4 172 57.0
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.4e-50 203.0 152 61.8
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 3.2e-50 202.6 152 61.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 6.6e-48 194.9 151 62.3
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.2e-44 184.1 176 54.5
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.7e-41 172.9 163 54.0
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 6.6e-40 168.3 130 60.8
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 8.6e-40 167.9 115 66.1
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 5.6e-39 165.2 108 72.2
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.3e-35 154.1 110 64.5
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.3e-35 154.1 110 64.5
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.1e-34 151.0 187 45.5
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 2.4e-34 149.8 136 51.5
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 6.0e-33 145.2 99 66.7
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 3.0e-32 142.9 196 39.3
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 3.3e-31 139.4 95 67.4
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 2.2e-27 126.7 112 51.8
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 4.9e-27 125.6 218 34.4
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.3e-24 117.5 113 50.4
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.8e-21 107.1 113 46.9
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 4.0e-21 105.9 116 45.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 4.4e-20 102.4 82 58.5
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.3e-19 100.9 139 40.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.2e-17 94.4 117 44.4
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 9.6e-15 84.7 81 49.4
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.4e-10 70.9 112 37.5
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 2.4e-10 70.1 57 57.9
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.4e-10 68.9 76 48.7
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 8.7e-08 61.6 200 26.5
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-07 60.8 61 47.5


User provided reference genes

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