Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 3.9e-37 157.5 75 100.0
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.4e-31 139.0 74 83.8
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 6.7e-21 103.6 71 64.8
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 8.8e-21 103.2 71 66.2
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 1.1e-20 102.8 71 64.8
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.1e-20 102.8 71 66.2
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 1.5e-20 102.4 71 64.8
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 2.0e-20 102.1 70 65.7
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 2.6e-20 101.7 71 66.2
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 2.6e-20 101.7 71 66.2
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 4.4e-20 100.9 70 65.7
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 4.4e-20 100.9 68 67.6
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 5.7e-20 100.5 71 63.4
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 7.4e-20 100.1 71 63.4
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 7.4e-20 100.1 71 63.4
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 7.4e-20 100.1 71 63.4
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 7.4e-20 100.1 71 63.4
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 9.7e-20 99.8 71 64.8
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 9.7e-20 99.8 71 63.4
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 9.7e-20 99.8 71 63.4
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 1.3e-19 99.4 71 62.0
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 1.7e-19 99.0 71 62.0
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 2.2e-19 98.6 71 62.0
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.2e-19 98.6 71 62.0
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 62.0
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 60.6
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 60.6
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 62.0
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 62.0
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 60.6
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 62.0
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 62.0
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 62.0
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 3.7e-19 97.8 71 60.6
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 3.7e-19 97.8 69 62.3
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 3.7e-19 97.8 71 62.0
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 3.7e-19 97.8 71 62.0
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 3.7e-19 97.8 71 63.4
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 3.7e-19 97.8 71 62.0
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 4.8e-19 97.4 71 59.2
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 4.8e-19 97.4 71 63.4
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 4.8e-19 97.4 71 62.0
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 4.8e-19 97.4 70 61.4
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 6.3e-19 97.1 71 60.6
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 6.3e-19 97.1 71 60.6
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 6.3e-19 97.1 71 62.0
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 6.3e-19 97.1 71 62.0
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 6.3e-19 97.1 71 60.6
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 8.2e-19 96.7 71 60.6
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 8.2e-19 96.7 70 62.9
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 8.2e-19 96.7 71 59.2
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 8.2e-19 96.7 70 62.9
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 1.1e-18 96.3 71 57.7
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 1.1e-18 96.3 71 62.0
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.1e-18 96.3 71 60.6
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 1.1e-18 96.3 71 60.6
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 1.4e-18 95.9 71 60.6
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 1.4e-18 95.9 70 62.9
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 2.4e-18 95.1 71 60.6
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.4e-18 95.1 71 62.0
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 2.4e-18 95.1 71 60.6
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.1e-18 94.7 70 61.4
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 4.1e-18 94.4 71 57.7
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 4.1e-18 94.4 71 59.2
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 5.3e-18 94.0 71 60.6
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 5.3e-18 94.0 71 60.6
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 7.0e-18 93.6 67 62.7
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 7.0e-18 93.6 67 62.7
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 9.1e-18 93.2 71 59.2
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 1.2e-17 92.8 67 61.2
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.6e-17 92.4 71 56.3
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 2.0e-17 92.0 71 57.7
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 2.0e-17 92.0 70 58.6
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 2.0e-17 92.0 71 57.7
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 2.6e-17 91.7 71 59.2
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 3.5e-17 91.3 71 57.7
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 4.5e-17 90.9 70 57.1
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 3.8e-16 87.8 70 54.3
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 5.0e-16 87.4 70 52.9
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 5.0e-16 87.4 71 57.7
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 6.5e-16 87.0 74 50.0
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.1e-15 86.3 67 55.2
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 2.5e-15 85.1 57 64.9
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 7.2e-15 83.6 71 57.7
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 1.6e-14 82.4 67 55.2
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 1.6e-14 82.4 67 56.7
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 3.6e-14 81.3 56 62.5
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 3.6e-14 81.3 60 61.7
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 3.6e-14 81.3 59 57.6
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.7e-14 80.9 64 54.7
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.7e-14 80.9 63 54.0
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.1e-14 80.5 64 54.7
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 6.1e-14 80.5 56 62.5
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 6.1e-14 80.5 56 64.3
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 8.0e-14 80.1 56 64.3
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 8.0e-14 80.1 57 59.6
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 1.4e-13 79.3 56 60.7
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.4e-13 79.3 56 62.5
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 1.8e-13 79.0 56 60.7
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 1.8e-13 79.0 56 62.5
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 2.3e-13 78.6 56 60.7
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.3e-13 78.6 56 62.5
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.3e-13 78.6 56 62.5
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 2.3e-13 78.6 56 62.5
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.3e-13 78.6 56 62.5
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 2.3e-13 78.6 56 62.5
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 2.3e-13 78.6 56 62.5
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 3.0e-13 78.2 56 60.7
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 3.0e-13 78.2 56 60.7
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 3.0e-13 78.2 56 60.7
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 3.0e-13 78.2 56 60.7
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.0e-13 78.2 57 57.9
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 4.0e-13 77.8 56 60.7
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 4.0e-13 77.8 56 60.7
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 4.0e-13 77.8 56 60.7
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 6.8e-13 77.0 71 52.1
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 6.8e-13 77.0 56 60.7
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.4e-12 74.3 52 65.4
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.4e-12 74.3 56 57.1
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 6.3e-11 70.5 52 63.5
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 1.4e-10 69.3 52 57.7
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 5.3e-10 67.4 48 58.3
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 5.3e-10 67.4 65 49.2
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 4.5e-09 64.3 44 65.9
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 7.7e-09 63.5 44 65.9
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.1e-07 59.7 52 53.8
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 1.5e-07 59.3 49 55.1


User provided reference genes

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