Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_2490 Physcomitrium patens HOM05D002071 ORTHO05D002109 1.1e-44 183.0 96 100.0
Pp3c6_18730 Physcomitrium patens HOM05D002071 ORTHO05D002109 3.4e-09 65.1 81 46.9
Mapoly0179s0016 Marchantia polymorpha HOM05D002071 ORTHO05D002109 4.4e-09 64.7 89 40.4
Pp3c6_16250 Physcomitrium patens HOM05D002071 ORTHO05D002109 5.8e-09 64.3 85 42.4
Pp3c5_17850 Physcomitrium patens HOM05D002071 ORTHO05D002109 1.7e-08 62.8 89 40.4
CARHR045800 Cardamine hirsuta HOM05D002071 ORTHO05D002109 2.2e-08 62.4 70 42.9
Pp3c16_18350 Physcomitrium patens HOM05D002071 ORTHO05D002109 4.9e-08 61.2 85 40.0
RcHm_v2.0_Chr5g0026171 Rosa chinensis HOM05D002071 ORTHO05D002109 4.9e-08 61.2 85 36.5
AagrBONN_evm.TU.Sc2ySwM_368.2105 Anthoceros agrestis HOM05D002071 ORTHO05D002109 6.4e-08 60.8 89 38.2
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 6.4e-08 60.8 85 38.8
BcaB07g33171 Brassica carinata HOM05D002071 ORTHO05D002109 6.4e-08 60.8 85 38.8
C06p10940 Brassica napus HOM05D005640 ORTHO05D007124 6.4e-08 60.8 85 36.5
BolC6t36176H Brassica oleracea HOM05D002071 ORTHO05D002109 6.4e-08 60.8 85 36.5
ClCG05G005640 Citrullus lanatus HOM05D002071 ORTHO05D002109 6.4e-08 60.8 88 38.6
BcaC08g43675 Brassica carinata HOM05D002071 ORTHO05D002109 1.1e-07 60.1 85 36.5
Pp3c14_14570 Physcomitrium patens HOM05D002071 ORTHO05D002109 1.1e-07 60.1 89 34.8
Pp3c25_7100 Physcomitrium patens HOM05D002071 ORTHO05D002109 1.1e-07 60.1 86 40.7
Atru.chr4.2712 Acer truncatum HOM05D002071 ORTHO05D002109 1.4e-07 59.7 81 38.3
CANSAT01G2870 Cannabis sativa HOM05D002071 ORTHO05D002109 1.4e-07 59.7 77 40.3
Thhalv10011668m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 1.4e-07 59.7 76 40.8
MD13G1176600 Malus domestica HOM05D002071 ORTHO05D002109 1.9e-07 59.3 88 37.5
RcHm_v2.0_Chr4g0420331 Rosa chinensis HOM05D002071 ORTHO05D002109 1.9e-07 59.3 88 35.2
TPR.G18018 Trifolium pratense HOM05D002071 ORTHO05D002109 1.9e-07 59.3 88 35.2
HPP92_000948 Vanilla planifolia HOM05D002071 ORTHO05D002109 1.9e-07 59.3 87 33.3
BraSC56t46386Z Brassica rapa HOM05D002071 ORTHO05D002109 2.4e-07 58.9 85 35.3
CsaV3_3G013990 Cucumis sativus L. HOM05D002071 ORTHO05D002109 2.4e-07 58.9 81 40.7
Pp3c2_9980 Physcomitrium patens HOM05D002071 ORTHO05D002109 2.4e-07 58.9 90 37.8
Sp1g41700 Schrenkiella parvula HOM05D002071 ORTHO05D002109 2.4e-07 58.9 92 34.8
Sed0010908 Sechium edule HOM05D002071 ORTHO05D002109 2.4e-07 58.9 89 37.1
EL10As18g24163 Beta vulgaris HOM05D002071 ORTHO05D002109 3.2e-07 58.5 89 36.0
MELO3C006591.2 Cucumis melo HOM05D002071 ORTHO05D002109 3.2e-07 58.5 81 40.7
Potri.010G027400 Populus trichocarpa HOM05D002071 ORTHO05D002109 3.2e-07 58.5 88 37.5
AL1G64330 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 4.2e-07 58.2 69 42.0
Ca_13450_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 4.2e-07 58.2 88 35.2
Cc03_g02680 Coffea canephora HOM05D002071 ORTHO05D002109 4.2e-07 58.2 77 40.3
Lalb_Chr19g0133321 Lupinus albus HOM05D002071 ORTHO05D002109 4.2e-07 58.2 83 39.8
SEGI_20222 Sequoiadendron giganteum HOM05D002071 ORTHO05D002109 4.2e-07 58.2 89 34.8
TWI73G0831 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 4.2e-07 58.2 88 34.1
AT1G56080 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 5.4e-07 57.8 70 41.4
Manes.03G188800 Manihot esculenta HOM05D002071 ORTHO05D002109 5.4e-07 57.8 74 39.2
Prupe.1G145800 Prunus persica HOM05D002071 ORTHO05D002109 5.4e-07 57.8 88 36.4
Nitab4.5_0002321g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 7.1e-07 57.4 85 36.5
COL.COLO4_38371 Corchorus olitorius HOM05D002071 ORTHO05D002109 9.3e-07 57.0 85 32.9
CsaV3_6G013640 Cucumis sativus L. HOM05D002071 ORTHO05D002109 9.3e-07 57.0 87 36.8
FAN07G0987 Fragaria x ananassa HOM05D002071 ORTHO05D002109 9.3e-07 57.0 81 35.8
Sabra05G0079900 Salix brachista HOM05D002071 ORTHO05D002109 9.3e-07 57.0 90 32.2
ClCG02G018560 Citrullus lanatus HOM05D002071 ORTHO05D002109 1.2e-06 56.6 89 34.8
MELO3C019653.2 Cucumis melo HOM05D002071 ORTHO05D002109 1.2e-06 56.6 87 36.8
FAN12G3312 Fragaria x ananassa HOM05D002071 ORTHO05D002109 1.2e-06 56.6 86 33.7
FAN22G1652 Fragaria x ananassa HOM05D002071 ORTHO05D002109 1.2e-06 56.6 86 33.7
Nitab4.5_0000611g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.2e-06 56.6 87 34.5
Psat3g118560 Pisum sativum HOM05D002071 ORTHO05D002109 1.2e-06 56.6 83 37.3
MSTRG.13072 Avicennia marina HOM05D002071 ORTHO05D002109 1.6e-06 56.2 85 35.3
FAN17G0280 Fragaria x ananassa HOM05D002071 ORTHO05D002109 1.6e-06 56.2 86 33.7
Lj3C807T5 Lonicera japonica HOM05D002071 ORTHO05D002109 1.6e-06 56.2 77 40.3
Lalb_Chr03g0031741 Lupinus albus HOM05D002071 ORTHO05D002109 1.6e-06 56.2 83 38.6
MBI19_g27934_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 1.6e-06 56.2 89 32.6
Oeu029292.1 Olea europaea HOM05D002071 ORTHO05D002109 1.6e-06 56.2 88 36.4
Sed0022069 Sechium edule HOM05D002071 ORTHO05D002109 1.6e-06 56.2 81 38.3
FvH4_3g15540 Fragaria vesca HOM05D002071 ORTHO05D002109 2.1e-06 55.8 85 32.9
FvH4_4g16760 Fragaria vesca HOM05D002071 ORTHO05D002109 2.1e-06 55.8 86 33.7
FAN11G0694 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.1e-06 55.8 85 32.9
FAN12G1745 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.1e-06 55.8 86 33.7
Lj6g0025453 Lotus japonicus HOM05D002071 ORTHO05D002109 2.1e-06 55.8 88 34.1
Nitab4.5_0002633g0030 Nicotiana tabacum HOM05D002071 ORTHO05D002109 2.1e-06 55.8 85 35.3
CARHR017000 Cardamine hirsuta HOM05D002071 ORTHO05D002109 2.7e-06 55.5 83 33.7
Ca_27015_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 2.7e-06 55.5 89 34.8
ECA240G1991 Erigeron canadensis HOM05D002071 ORTHO05D002109 2.7e-06 55.5 85 36.5
FAN16G0661 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.7e-06 55.5 85 32.9
FAN25G0138 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.7e-06 55.5 85 32.9
Nn3g21205 Nelumbo nucifera HOM05D002071 ORTHO05D002109 2.7e-06 55.5 81 38.3
Pp3c1_28730 Physcomitrium patens HOM05D002071 ORTHO05D002109 2.7e-06 55.5 89 34.8
Psat4g028600 Pisum sativum HOM05D002071 ORTHO05D002109 2.7e-06 55.5 88 34.1
Potri.005G097600 Populus trichocarpa HOM05D002071 ORTHO05D002109 2.7e-06 55.5 85 34.1
Sed0026955 Sechium edule HOM05D002071 ORTHO05D002109 2.7e-06 55.5 85 35.3
Hund20637 Selenicereus undatus HOM05D002071 ORTHO05D002109 2.7e-06 55.5 84 38.1
Solyc01g080510.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 2.7e-06 55.5 86 34.9
PGSC0003DMG400022123 Solanum tuberosum HOM05D002071 ORTHO05D002109 2.7e-06 55.5 85 35.3
SGA_v2.0_scaffold239G44048 Striga asiatica HOM05D002071 ORTHO05D002109 2.7e-06 55.5 85 36.5
GSVIVG01017843001 Vitis vinifera HOM05D002071 ORTHO05D002109 2.7e-06 55.5 81 37.0
CSS0036992 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 3.5e-06 55.1 84 35.7
Cpa.g.sc16.80 Carica papaya HOM05D002071 ORTHO05D002109 3.5e-06 55.1 81 35.8
Duzib151G0113 Durio zibethinus HOM05D002071 ORTHO05D002109 3.5e-06 55.1 87 36.8
ECA236G3752 Erigeron canadensis HOM05D002071 ORTHO05D002109 3.5e-06 55.1 88 34.1
MD10G1203900 Malus domestica HOM05D002071 ORTHO05D002109 3.5e-06 55.1 85 35.3
Nitab4.5_0008429g0020 Nicotiana tabacum HOM05D002071 ORTHO05D002109 3.5e-06 55.1 87 34.5
AL1G28690 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 4.6e-06 54.7 85 32.9
arahy.Tifrunner.gnm1.ann1.L1XN9H Arachis hypogaea HOM05D002071 ORTHO05D002109 4.6e-06 54.7 85 35.3
CiPaw.01G156100 Carya illinoinensis HOM05D002071 ORTHO05D002109 4.6e-06 54.7 77 39.0
Migut.H01684 Erythranthe guttata HOM05D002071 ORTHO05D002109 4.6e-06 54.7 85 34.1
Eucgr.B01217 Eucalyptus grandis HOM05D002071 ORTHO05D002109 4.6e-06 54.7 80 38.8
FAN21G0659 Fragaria x ananassa HOM05D002071 ORTHO05D002109 4.6e-06 54.7 85 32.9
Gorai.002G104700 Gossypium raimondii HOM05D002071 ORTHO05D002109 4.6e-06 54.7 92 29.3
Lalb_Chr01g0007141 Lupinus albus HOM05D002071 ORTHO05D002109 4.6e-06 54.7 83 39.8
MBI05_g09168_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 4.6e-06 54.7 87 35.6
Nn7g37944 Nelumbo nucifera HOM05D002071 ORTHO05D002109 4.6e-06 54.7 88 35.2
Phvul.006G159000 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 4.6e-06 54.7 88 34.1
CiPaw.11G065000 Carya illinoinensis HOM05D002071 ORTHO05D002109 6.0e-06 54.3 85 34.1
Dinv38345 Davidia involucrata HOM05D002071 ORTHO05D000535 6.0e-06 54.3 88 34.1
Migut.M01546 Erythranthe guttata HOM05D002071 ORTHO05D002109 6.0e-06 54.3 89 36.0
Gohir.D10G163700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 6.0e-06 54.3 88 37.5
Gorai.011G182600 Gossypium raimondii HOM05D002071 ORTHO05D002109 6.0e-06 54.3 88 37.5
HanXRQChr13g0410161 Helianthus annuus HOM05D002071 ORTHO05D002109 6.0e-06 54.3 77 37.7
Hma1.2p1_0078F.1_g040950 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 6.0e-06 54.3 84 35.7
Hma1.2p1_1671F.1_g296690 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 6.0e-06 54.3 84 35.7
Lj3g0001439 Lotus japonicus HOM05D002071 ORTHO05D002109 6.0e-06 54.3 85 35.3
Sopen07g034680 Solanum pennellii HOM05D002071 ORTHO05D002109 6.0e-06 54.3 85 35.3
THA.LOC104808126 Tarenaya hassleriana HOM05D002071 ORTHO05D002109 6.0e-06 54.3 82 35.4
TAR365G0956 Trochodendron aralioides HOM05D002071 ORTHO05D002109 6.0e-06 54.3 84 38.1
TAR629G2653 Trochodendron aralioides HOM05D002071 ORTHO05D002109 6.0e-06 54.3 85 34.1
Zm00001eb218110 Zea mays HOM05D002071 ORTHO05D002109 6.0e-06 54.3 89 36.0
BcaB02g06637 Brassica carinata HOM05D002071 ORTHO05D002109 7.8e-06 53.9 85 31.8
Glyma.15G100200 Glycine max HOM05D002071 ORTHO05D002109 7.8e-06 53.9 88 33.0
Zm00001eb052610 Zea mays HOM05D002071 ORTHO05D002109 7.8e-06 53.9 87 35.6


User provided reference genes

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