Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.8e-196 688.0 343 100.0
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.3e-179 631.7 343 90.4
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 5.8e-168 594.3 341 83.9
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 5.6e-163 577.8 343 81.0
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.5e-155 552.4 335 80.0
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.2e-152 543.5 338 79.3
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 2.6e-152 542.3 334 78.7
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 4.4e-152 541.6 337 78.3
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 5.8e-152 541.2 334 78.4
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 9.9e-152 540.4 333 78.7
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.7e-151 539.7 334 77.8
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.2e-151 539.3 337 77.4
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 2.2e-151 539.3 336 77.4
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 2.9e-151 538.9 334 77.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 4.9e-151 538.1 339 76.4
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 4.9e-151 538.1 335 78.8
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 4.9e-151 538.1 334 78.4
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 6.4e-151 537.7 335 78.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 6.4e-151 537.7 335 77.9
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 8.3e-151 537.3 337 76.9
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 8.3e-151 537.3 336 77.4
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.4e-150 536.6 337 76.9
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.9e-150 536.2 341 76.8
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.9e-150 536.2 341 76.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 3.2e-150 535.4 337 76.9
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 4.1e-150 535.0 335 77.6
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 5.4e-150 534.6 336 76.8
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 9.2e-150 533.9 337 76.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.2e-150 533.9 335 76.4
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.2e-149 533.5 338 76.9
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.2e-149 533.5 339 76.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.2e-149 533.5 334 76.6
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.6e-149 533.1 334 76.6
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.6e-149 533.1 334 76.6
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.6e-149 533.1 335 77.0
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.1e-149 532.7 334 76.6
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.1e-149 532.7 336 76.5
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 2.1e-149 532.7 336 76.5
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 2.7e-149 532.3 339 76.1
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 3.5e-149 531.9 334 76.9
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 4.6e-149 531.6 334 76.0
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 4.6e-149 531.6 339 76.1
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.6e-149 531.6 341 76.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 6.0e-149 531.2 334 76.3
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 7.8e-149 530.8 337 75.7
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 7.8e-149 530.8 344 75.0
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 7.8e-149 530.8 334 77.2
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.8e-149 530.8 335 77.0
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.3e-148 530.0 334 76.0
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.3e-148 530.0 334 76.3
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.3e-148 530.0 335 77.0
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.7e-148 529.6 334 76.0
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 1.7e-148 529.6 334 76.3
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.3e-148 529.3 334 76.0
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 3.0e-148 528.9 334 76.9
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 5.1e-148 528.1 334 77.5
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 5.1e-148 528.1 338 76.3
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.1e-148 528.1 338 76.3
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 6.6e-148 527.7 334 76.6
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 6.6e-148 527.7 334 76.0
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 8.6e-148 527.3 334 75.7
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 8.6e-148 527.3 334 75.7
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 8.6e-148 527.3 334 75.7
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 8.6e-148 527.3 337 75.7
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 8.6e-148 527.3 334 76.0
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-147 526.9 334 75.1
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.1e-147 526.9 337 77.4
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.1e-147 526.9 338 76.0
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.5e-147 526.6 335 76.1
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.9e-147 526.2 334 75.4
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.5e-147 525.8 334 76.6
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 3.3e-147 525.4 334 76.0
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.3e-147 525.4 344 74.4
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 4.3e-147 525.0 334 74.9
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 9.5e-147 523.9 333 75.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.6e-146 523.1 317 80.1
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.6e-146 523.1 334 74.6
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 2.1e-146 522.7 334 75.4
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 2.8e-146 522.3 334 75.7
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 6.2e-146 521.2 320 78.8
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.0e-145 518.5 337 73.9
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 4.0e-145 518.5 343 73.2
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.0e-144 516.2 334 74.6
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 7.6e-144 514.2 320 77.5
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 9.9e-144 513.8 354 72.6
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.7e-143 513.1 322 75.2
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.7e-143 513.1 334 74.3
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.9e-143 512.3 339 73.5
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.9e-143 512.3 315 77.8
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 2.9e-143 512.3 327 76.5
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.8e-143 511.9 334 73.1
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 8.4e-143 510.8 335 74.6
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 8.4e-143 510.8 311 78.1
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.1e-142 510.4 335 74.3
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.1e-142 510.4 334 73.7
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.4e-142 510.0 335 74.0
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.4e-142 510.0 335 74.3
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.4e-142 509.2 335 74.0
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.3
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.3
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.0
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.0
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.3
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 2.4e-142 509.2 335 74.3
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.2e-142 508.8 336 74.1
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 3.2e-142 508.8 345 72.8
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 5.4e-142 508.1 335 74.0
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 5.4e-142 508.1 335 74.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 9.2e-142 507.3 335 73.7
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.1e-141 506.1 335 73.4
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 2.7e-141 505.8 335 73.7
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 3.5e-141 505.4 341 71.8
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 4.6e-141 505.0 335 73.7
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 4.6e-141 505.0 328 74.1
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.6e-141 505.0 335 73.7
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 7.8e-141 504.2 335 73.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 7.8e-141 504.2 376 67.6
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 6.6e-140 501.1 316 76.3
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 8.7e-140 500.7 350 70.9
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.3e-139 497.7 339 72.0
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.1e-138 496.1 311 76.2
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.5e-136 490.0 316 75.6
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 3.4e-136 488.8 334 72.2
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.9e-135 485.0 338 71.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.5e-131 473.4 334 70.4
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 7.6e-128 461.1 377 63.4
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 9.9e-128 460.7 419 59.2
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.1e-125 453.0 361 64.8
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 5.6e-123 444.9 267 80.1
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 5.6e-123 444.9 289 74.4
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.8e-119 432.2 264 79.9
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.8e-119 432.2 264 79.9
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.4e-118 430.3 264 78.8
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.3e-116 423.7 250 82.0
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.3e-116 423.7 335 63.6
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 6.7e-116 421.4 337 64.7
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 2.5e-110 402.9 334 62.3
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 9.3e-110 401.0 334 62.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.1e-109 399.8 341 60.7
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 6.7e-108 394.8 238 79.8
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.3e-106 390.6 251 74.9
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 7.7e-104 381.3 313 58.8
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.9e-102 376.7 327 59.3
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.3e-100 369.8 251 72.1
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.9e-94 350.1 216 77.8
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.4e-57 226.9 171 73.7
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 5.6e-46 189.1 131 72.5
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.3e-31 140.6 180 50.6
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 4.4e-27 126.3 74 82.4
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.5e-22 111.3 76 69.7
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 7.3e-22 109.0 79 62.0
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-20 105.1 75 68.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 5.4e-17 92.8 79 59.5
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.2e-11 75.1 52 65.4
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 8.4e-10 68.9 120 39.2
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.4e-09 68.2 98 41.8
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.4e-09 67.4 39 76.9
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 7.9e-08 62.4 55 56.4
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 5.6e-06 56.2 59 52.5
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 5.6e-06 56.2 59 52.5


User provided reference genes

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