Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_220 Physcomitrium patens HOM05D000211 ORTHO05D318748 5.4e-36 153.7 72 100.0
Pp3c12_16120 Physcomitrium patens HOM05D000211 ORTHO05D002517 4.1e-15 84.3 83 55.4
Pp3c4_11860 Physcomitrium patens HOM05D000211 ORTHO05D002517 1.9e-12 75.5 83 49.4
Pp3c3_25400 Physcomitrium patens HOM05D000211 ORTHO05D002517 2.5e-12 75.1 83 48.2
Cfa008411 Carpinus fangiana HOM05D000211 ORTHO05D002517 7.2e-12 73.6 97 42.3
Haze_11256 Corylus avellana HOM05D000211 ORTHO05D002517 7.2e-12 73.6 97 42.3
Gohir.D08G206000 Gossypium hirsutum HOM05D000211 ORTHO05D002517 2.7e-11 71.6 97 43.3
Gorai.004G218100 Gossypium raimondii HOM05D000211 ORTHO05D002517 2.7e-11 71.6 97 43.3
Eucgr.H00506 Eucalyptus grandis HOM05D000211 ORTHO05D002517 4.6e-11 70.9 79 48.1
Nitab4.5_0000941g0100 Nicotiana tabacum HOM05D000211 ORTHO05D002517 4.6e-11 70.9 78 48.7
Nitab4.5_0002398g0070 Nicotiana tabacum HOM05D000211 ORTHO05D002517 4.6e-11 70.9 78 48.7
MSTRG.9942 Avicennia marina HOM05D000211 ORTHO05D002517 7.9e-11 70.1 97 41.2
Peaxi162Scf00788g00013 Petunia axillaris HOM05D000211 ORTHO05D002517 1.0e-10 69.7 78 47.4
Rhsim02G0031500 Rhododendron simsii HOM05D000211 ORTHO05D002517 1.0e-10 69.7 84 48.8
Solyc09g082970.3 Solanum lycopersicum HOM05D000211 ORTHO05D002517 1.0e-10 69.7 78 47.4
Sopen09g031830 Solanum pennellii HOM05D000211 ORTHO05D002517 1.0e-10 69.7 78 47.4
THA.LOC104822803 Tarenaya hassleriana HOM05D000211 ORTHO05D002517 1.0e-10 69.7 97 42.3
CiPaw.01G193400 Carya illinoinensis HOM05D000211 ORTHO05D002517 1.4e-10 69.3 79 48.1
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 1.4e-10 69.3 102 42.2
Prupe.1G024200 Prunus persica HOM05D000211 ORTHO05D002517 1.4e-10 69.3 79 48.1
Hund20654 Selenicereus undatus HOM05D000211 ORTHO05D002517 1.4e-10 69.3 95 41.1
AagrBONN_evm.TU.Sc2ySwM_344.4845 Anthoceros agrestis HOM05D000211 ORTHO05D002517 1.8e-10 68.9 99 39.4
COL.COLO4_13175 Corchorus olitorius HOM05D000211 ORTHO05D002517 1.8e-10 68.9 95 42.1
Lj6A651G58 Lonicera japonica HOM05D000211 ORTHO05D002517 1.8e-10 68.9 77 50.6
Lalb_Chr06g0168931 Lupinus albus HOM05D000211 ORTHO05D002517 1.8e-10 68.9 79 46.8
TWI53G1723 Tripterygium wilfordii HOM05D000211 ORTHO05D002517 1.8e-10 68.9 78 47.4
DCAR_027259 Daucus carota HOM05D000211 ORTHO05D002517 2.3e-10 68.6 77 49.4
Mapoly0070s0058 Marchantia polymorpha HOM05D000211 ORTHO05D002517 2.3e-10 68.6 103 40.8
Nn1g02515 Nelumbo nucifera HOM05D000211 ORTHO05D002517 2.3e-10 68.6 79 48.1
THA.LOC104808583 Tarenaya hassleriana HOM05D000211 ORTHO05D002517 2.3e-10 68.6 79 48.1
vmacro15394 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.3e-10 68.6 78 48.7
CAN.G749.13 Capsicum annuum HOM05D000211 ORTHO05D002517 3.0e-10 68.2 78 44.9
Cpa.g.sc44.141 Carica papaya HOM05D000211 ORTHO05D002517 3.0e-10 68.2 79 48.1
Ciclev10004616m.g Citrus clementina HOM05D000211 ORTHO05D002517 3.0e-10 68.2 77 48.1
HanXRQChr15g0468861 Helianthus annuus HOM05D000211 ORTHO05D002517 3.0e-10 68.2 84 47.6
MBI11_g26135_MAGBIO Magnolia biondii HOM05D000211 ORTHO05D002517 3.0e-10 68.2 79 46.8
QL06p000493 Quercus lobata HOM05D000211 ORTHO05D002517 3.0e-10 68.2 79 46.8
Ciclev10019453m.g Citrus clementina HOM05D000211 ORTHO05D002517 3.9e-10 67.8 77 46.8
Migut.G00405 Erythranthe guttata HOM05D000211 ORTHO05D002517 3.9e-10 67.8 97 41.2
PGR142G0223 Punica granatum HOM05D000211 ORTHO05D002517 3.9e-10 67.8 79 46.8
RcHm_v2.0_Chr4g0388881 Rosa chinensis HOM05D000211 ORTHO05D002517 3.9e-10 67.8 79 46.8
Atru.chr4.2316 Acer truncatum HOM05D000211 ORTHO05D002517 5.1e-10 67.4 97 42.3
CSS0002815 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D002517 5.1e-10 67.4 84 46.4
CSS0004366 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D002517 5.1e-10 67.4 84 46.4
Cc03_g04490 Coffea canephora HOM05D000211 ORTHO05D002517 5.1e-10 67.4 84 47.6
Duzib212G0243 Durio zibethinus HOM05D000211 ORTHO05D002517 5.1e-10 67.4 78 47.4
Lsat_1_v5_gn_5_68180 Lactuca sativa HOM05D000211 ORTHO05D002517 5.1e-10 67.4 84 46.4
Potri.010G080700 Populus trichocarpa HOM05D000211 ORTHO05D002517 5.1e-10 67.4 95 41.1
unitig_899.g14882 Utricularia gibba HOM05D000211 ORTHO05D002517 5.1e-10 67.4 78 47.4
CiPaw.02G118500 Carya illinoinensis HOM05D000211 ORTHO05D002517 6.7e-10 67.0 79 46.8
ClCG06G006570 Citrullus lanatus HOM05D000211 ORTHO05D002517 6.7e-10 67.0 79 45.6
COL.COLO4_06096 Corchorus olitorius HOM05D000211 ORTHO05D002517 6.7e-10 67.0 79 46.8
Dinv14067 Davidia involucrata HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
Duzib151G0070 Durio zibethinus HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
Glyma.20G211200 Glycine max HOM05D000211 ORTHO05D002517 6.7e-10 67.0 97 40.2
Gohir.A09G220800 Gossypium hirsutum HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
Gohir.D09G223100 Gossypium hirsutum HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
Gorai.006G244400 Gossypium raimondii HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
Manes.03G171200 Manihot esculenta HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
Potri.008G159700 Populus trichocarpa HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
Sc13g0004870 Simmondsia chinensis HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 45.5
Thecc.04G241800 Theobroma cacao HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
TAR262G0002 Trochodendron aralioides HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
TAR365G0034 Trochodendron aralioides HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
GSVIVG01018079001 Vitis vinifera HOM05D000211 ORTHO05D002517 6.7e-10 67.0 77 48.1
CSS0010452 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D002517 8.8e-10 66.6 77 48.1
FvH4_4g01820 Fragaria vesca HOM05D000211 ORTHO05D002517 8.8e-10 66.6 79 45.6
Hma1.2p1_0897F.1_g234255 Hydrangea macrophylla HOM05D000211 ORTHO05D002517 8.8e-10 66.6 77 46.8
Hma1.2p1_0897F.1_g234260 Hydrangea macrophylla HOM05D000211 ORTHO05D002517 8.8e-10 66.6 77 46.8
Zm00001eb301440 Zea mays HOM05D000211 ORTHO05D002517 8.8e-10 66.6 78 46.2
Sabra08G0121700 Salix brachista HOM05D000211 ORTHO05D002517 1.1e-09 66.2 77 48.1
Aqoxy2G03495 Aquilegia oxysepala HOM05D000211 ORTHO05D002517 1.5e-09 65.9 79 45.6
CDE07G1718 Ceratophyllum demersum HOM05D000211 ORTHO05D002517 1.5e-09 65.9 79 44.3
MELO3C014272.2 Cucumis melo HOM05D000211 ORTHO05D002517 1.5e-09 65.9 79 44.3
CsaV3_2G013320 Cucumis sativus L. HOM05D000211 ORTHO05D002517 1.5e-09 65.9 79 44.3
Dinv44601 Davidia involucrata HOM05D000211 ORTHO05D002517 1.5e-09 65.9 77 48.1
ECA233G2529 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.5e-09 65.9 84 45.2
HanXRQChr16g0514671 Helianthus annuus HOM05D000211 ORTHO05D002517 1.5e-09 65.9 77 46.8
MD16G1202600 Malus domestica HOM05D000211 ORTHO05D002517 1.5e-09 65.9 79 45.6
Thecc.01G269100 Theobroma cacao HOM05D000211 ORTHO05D002517 1.5e-09 65.9 79 45.6
AL3G37350 Arabidopsis lyrata HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
AT3G22960 Arabidopsis thaliana HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
A01p32160 Brassica napus HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
BraA01t03341Z Brassica rapa HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
Carub.0003s2310 Capsella rubella HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
CARHR098900 Cardamine hirsuta HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
Thhalv10020340m.g Eutrema salsugineum HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
PSO210G5587 Papaver somniferum HOM05D000211 ORTHO05D002517 2.0e-09 65.5 78 46.2
PSO461G0067 Papaver somniferum HOM05D000211 ORTHO05D002517 2.0e-09 65.5 78 46.2
Sabra10G0062600 Salix brachista HOM05D000211 ORTHO05D002517 2.0e-09 65.5 77 48.1
Sp3g20650 Schrenkiella parvula HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 45.6
Sed0009210 Sechium edule HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 43.0
SGA_v2.0_scaffold79G25612 Striga asiatica HOM05D000211 ORTHO05D002517 2.0e-09 65.5 79 46.8
unitig_736.g22454 Utricularia gibba HOM05D000211 ORTHO05D002517 2.0e-09 65.5 78 46.2
Ca_09885_v3 Cicer arietinum L. HOM05D000211 ORTHO05D002517 2.5e-09 65.1 77 46.8
Glyma.10G178900 Glycine max HOM05D000211 ORTHO05D002517 2.5e-09 65.1 97 39.2
Os07g0181000 Oryza sativa ssp. japonica HOM05D000211 ORTHO05D002517 2.5e-09 65.1 95 38.9
Peaxi162Scf00467g00913 Petunia axillaris HOM05D000211 ORTHO05D002517 2.5e-09 65.1 97 37.1
Psat6g113960 Pisum sativum HOM05D000211 ORTHO05D002517 2.5e-09 65.1 78 46.2
Sed0002520 Sechium edule HOM05D000211 ORTHO05D002517 2.5e-09 65.1 79 44.3
TWI73G1169 Tripterygium wilfordii HOM05D000211 ORTHO05D002517 2.5e-09 65.1 78 46.2
Ah.13g071570 Amaranthus hybridus HOM05D000211 ORTHO05D002517 3.3e-09 64.7 97 34.0
CANSAT78G1331 Cannabis sativa HOM05D000211 ORTHO05D002517 3.3e-09 64.7 95 38.9
Dinv34558 Davidia involucrata HOM05D000211 ORTHO05D002517 3.3e-09 64.7 79 44.3
Migut.N00225 Erythranthe guttata HOM05D000211 ORTHO05D002517 3.3e-09 64.7 97 39.2
SalBow2G3289 Salvia bowleyana HOM05D000211 ORTHO05D002517 3.3e-09 64.7 78 46.2
TPR.G36416 Trifolium pratense HOM05D000211 ORTHO05D002517 3.3e-09 64.7 77 46.8
HPP92_018607 Vanilla planifolia HOM05D000211 ORTHO05D002517 3.3e-09 64.7 78 46.2
arahy.Tifrunner.gnm1.ann1.53XZTF Arachis hypogaea HOM05D000211 ORTHO05D002517 4.3e-09 64.3 79 44.3
arahy.Tifrunner.gnm1.ann1.5P7LAL Arachis hypogaea HOM05D000211 ORTHO05D002517 4.3e-09 64.3 79 44.3
BcaB04g20483 Brassica carinata HOM05D000211 ORTHO05D002517 4.3e-09 64.3 79 44.3
BcaC09g49230 Brassica carinata HOM05D000211 ORTHO05D002517 4.3e-09 64.3 79 44.3
C01p41180 Brassica napus HOM05D000211 ORTHO05D002517 4.3e-09 64.3 79 44.3
BolC1t04072H Brassica oleracea HOM05D000211 ORTHO05D002517 4.3e-09 64.3 79 44.3
TWI09G1205 Tripterygium wilfordii HOM05D000211 ORTHO05D002517 4.3e-09 64.3 78 46.2
TAR636G0152 Trochodendron aralioides HOM05D000211 ORTHO05D002517 4.3e-09 64.3 77 45.5
arahy.Tifrunner.gnm1.ann1.75KGS3 Arachis hypogaea HOM05D000211 ORTHO05D002517 5.7e-09 63.9 79 44.3
arahy.Tifrunner.gnm1.ann1.RQR8IN Arachis hypogaea HOM05D000211 ORTHO05D002517 5.7e-09 63.9 79 44.3
Lj5g0020856 Lotus japonicus HOM05D000211 ORTHO05D002517 5.7e-09 63.9 79 44.3
SEGI_40164 Sequoiadendron giganteum HOM05D000211 ORTHO05D002517 5.7e-09 63.9 96 37.5
Aa31LG8G9460 Aethionema arabicum HOM05D000211 ORTHO05D002517 7.4e-09 63.5 77 45.5
Manes.15G034400 Manihot esculenta HOM05D000211 ORTHO05D002517 7.4e-09 63.5 77 45.5
Medtr1g076540 Medicago truncatula HOM05D000211 ORTHO05D002517 7.4e-09 63.5 77 45.5
BcaB03g14640 Brassica carinata HOM05D000211 ORTHO05D002517 9.7e-09 63.2 79 44.3
BcaC01g03407 Brassica carinata HOM05D000211 ORTHO05D002517 9.7e-09 63.2 79 44.3
A03p43090 Brassica napus HOM05D000211 ORTHO05D002517 9.7e-09 63.2 79 44.3
C03p52900 Brassica napus HOM05D000211 ORTHO05D002517 9.7e-09 63.2 79 44.3
BolC3t17555H Brassica oleracea HOM05D000211 ORTHO05D002517 9.7e-09 63.2 79 44.3
BraA03t13451Z Brassica rapa HOM05D000211 ORTHO05D002517 9.7e-09 63.2 79 44.3
AUR62041212 Chenopodium quinoa HOM05D000211 ORTHO05D002517 9.7e-09 63.2 77 40.3
Nitab4.5_0000977g0100 Nicotiana tabacum HOM05D000211 ORTHO05D002517 1.3e-08 62.8 78 42.3
ATR0665G349 Amborella trichopoda HOM05D000211 ORTHO05D002517 1.7e-08 62.4 78 44.9
Lalb_Chr01g0020861 Lupinus albus HOM05D000211 ORTHO05D002517 1.7e-08 62.4 97 37.1
Phvul.007G110900 Phaseolus vulgaris HOM05D000211 ORTHO05D002517 1.7e-08 62.4 79 43.0
VMungo0720G2850 Vigna mungo HOM05D000211 ORTHO05D002517 1.7e-08 62.4 79 43.0
Oeu009113.1 Olea europaea HOM05D000211 ORTHO05D002517 2.2e-08 62.0 78 43.6
SMO116G0304 Selaginella moellendorffii HOM05D000211 ORTHO05D002517 2.2e-08 62.0 97 38.1
Gohir.A10G117200 Gossypium hirsutum HOM05D000211 ORTHO05D002517 2.8e-08 61.6 77 45.5
Gohir.D10G150200 Gossypium hirsutum HOM05D000211 ORTHO05D002517 2.8e-08 61.6 77 45.5
Gorai.011G167200 Gossypium raimondii HOM05D000211 ORTHO05D002517 2.8e-08 61.6 77 45.5
MBI04_g27055_MAGBIO Magnolia biondii HOM05D000211 ORTHO05D002517 2.8e-08 61.6 56 57.1
Nitab4.5_0003815g0060 Nicotiana tabacum HOM05D000211 ORTHO05D002517 2.8e-08 61.6 78 42.3
SGA_v2.0_scaffold308G48116 Striga asiatica HOM05D000211 ORTHO05D002517 3.7e-08 61.2 79 43.0
FAN22G1099 Fragaria x ananassa HOM05D000211 ORTHO05D002517 4.8e-08 60.8 90 41.1
Actinidia08455 Actinidia chinensis HOM05D000211 ORTHO05D002517 6.3e-08 60.5 84 45.2
SEGI_32434 Sequoiadendron giganteum HOM05D000211 ORTHO05D002517 6.3e-08 60.5 78 43.6
Ah.11g050080 Amaranthus hybridus HOM05D000211 ORTHO05D002517 8.2e-08 60.1 98 35.7
GSVIVG01003140001 Vitis vinifera HOM05D000211 ORTHO05D002517 1.1e-07 59.7 77 44.2
EL10Ac5g10479 Beta vulgaris HOM05D000211 ORTHO05D002517 1.8e-07 58.9 95 35.8
AUR62011956 Chenopodium quinoa HOM05D000211 ORTHO05D002517 1.8e-07 58.9 98 34.7
AUR62032269 Chenopodium quinoa HOM05D000211 ORTHO05D002517 1.8e-07 58.9 98 34.7
Zm00001eb060760 Zea mays HOM05D000211 ORTHO05D002517 1.8e-07 58.9 79 41.8
FAN12G2707 Fragaria x ananassa HOM05D000211 ORTHO05D002517 3.1e-07 58.2 90 40.0
FAN12G3563 Fragaria x ananassa HOM05D000211 ORTHO05D002517 3.1e-07 58.2 90 40.0
FAN17G2806 Fragaria x ananassa HOM05D000211 ORTHO05D002517 3.1e-07 58.2 90 40.0
MD13G1202500 Malus domestica HOM05D000211 ORTHO05D002517 9.1e-07 56.6 92 39.1
CBR_g38623 Chara braunii HOM05D000211 ORTHO05D002517 1.2e-06 56.2 77 36.4
CBR_g38625 Chara braunii HOM05D000211 ORTHO05D002517 1.2e-06 56.2 77 36.4
Hund02871 Selenicereus undatus HOM05D000211 ORTHO05D002517 1.2e-06 56.2 97 35.1
Hma1.2p1_0134F.1_g061500 Hydrangea macrophylla HOM05D000211 ORTHO05D002517 2.6e-06 55.1 68 47.1
Mapoly0065s0034 Marchantia polymorpha HOM05D000211 ORTHO05D002517 4.5e-06 54.3 96 34.4


User provided reference genes

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