Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 1.0e-190 669.8 325 100.0
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 2.1e-34 150.6 331 31.4
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 2.1e-34 150.6 321 31.2
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 3.6e-34 149.8 339 30.7
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 4.6e-34 149.4 305 30.8
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 7.9e-34 148.7 339 30.7
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.3e-33 147.9 331 31.1
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 5.1e-33 146.0 370 29.5
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 8.7e-33 145.2 314 29.9
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.5e-32 144.4 317 30.3
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 3.3e-32 143.3 331 29.6
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 4.3e-32 142.9 331 30.5
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 5.7e-32 142.5 320 28.8
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 9.7e-32 141.7 335 29.9
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 9.7e-32 141.7 328 29.0
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 9.7e-32 141.7 339 30.4
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.3e-31 141.4 304 30.3
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.3e-31 141.4 350 28.0
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.6e-31 141.0 323 29.1
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 1.6e-31 141.0 328 29.3
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 2.2e-31 140.6 331 29.6
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 2.2e-31 140.6 331 29.6
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 2.2e-31 140.6 322 28.0
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 2.8e-31 140.2 328 29.6
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 3.7e-31 139.8 366 27.0
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 4.8e-31 139.4 331 29.3
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 4.8e-31 139.4 328 29.9
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 4.8e-31 139.4 320 29.7
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 4.8e-31 139.4 328 29.9
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 6.3e-31 139.0 372 28.8
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 6.3e-31 139.0 322 27.0
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.4e-30 137.9 328 29.0
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 1.4e-30 137.9 323 28.8
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.4e-30 137.9 306 28.1
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 1.4e-30 137.9 372 27.7
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 1.8e-30 137.5 331 28.7
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.4e-30 137.1 315 28.6
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.4e-30 137.1 280 30.4
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 2.4e-30 137.1 327 29.4
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 3.1e-30 136.7 328 29.0
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 3.1e-30 136.7 328 29.6
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 3.1e-30 136.7 322 27.6
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 4.1e-30 136.3 339 29.5
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 4.1e-30 136.3 315 28.3
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 4.1e-30 136.3 334 29.0
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 4.1e-30 136.3 331 29.0
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 4.1e-30 136.3 324 28.4
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 4.1e-30 136.3 339 28.9
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 6.9e-30 135.6 322 28.0
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 6.9e-30 135.6 352 28.1
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 9.1e-30 135.2 327 28.1
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 9.1e-30 135.2 280 30.0
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 1.2e-29 134.8 323 28.2
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 2.0e-29 134.0 285 29.5
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.0e-29 134.0 285 28.8
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 2.0e-29 134.0 285 29.8
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 2.6e-29 133.7 330 28.5
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 3.4e-29 133.3 322 27.6
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 3.4e-29 133.3 331 27.2
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 4.5e-29 132.9 384 26.3
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 4.5e-29 132.9 324 27.5
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 5.9e-29 132.5 264 29.9
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 7.7e-29 132.1 373 27.9
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 7.7e-29 132.1 327 29.4
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 7.7e-29 132.1 328 27.4
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.0e-28 131.7 320 29.1
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 1.3e-28 131.3 334 27.2
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.3e-28 131.3 315 27.6
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-28 131.0 271 30.3
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 1.7e-28 131.0 328 27.7
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 1.7e-28 131.0 323 26.9
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 2.2e-28 130.6 294 30.3
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 2.2e-28 130.6 327 28.1
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 3.8e-28 129.8 252 30.6
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.8e-28 129.8 373 27.6
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 8.5e-28 128.6 323 26.6
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.1e-27 128.3 354 27.4
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.9e-27 127.5 279 28.0
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.9e-27 127.5 279 28.0
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 2.5e-27 127.1 330 27.9
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 3.2e-27 126.7 342 27.5
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 5.5e-27 125.9 363 25.6
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.4e-27 125.2 343 25.7
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.1e-26 124.0 324 28.1
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 3.6e-26 123.2 249 29.3
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 7.9e-26 122.1 335 26.0
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 7.9e-26 122.1 289 27.0
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.8e-25 120.9 206 30.1
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 2.3e-25 120.6 259 29.7
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.9e-25 119.8 360 24.7
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 3.9e-25 119.8 367 26.7
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 8.8e-25 118.6 330 26.7
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.5e-24 117.9 248 29.0
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 2.0e-24 117.5 349 26.4
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 8.2e-23 112.1 289 30.1
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 1.9e-19 100.9 300 28.7
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.2e-19 100.1 236 28.8
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 5.5e-19 99.4 310 25.5
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 2.1e-18 97.4 306 24.8
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 1.5e-16 91.3 266 27.1
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.7e-12 77.8 270 24.1
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 5.0e-12 76.3 149 30.9
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 5.0e-12 76.3 252 26.6
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 4.7e-10 69.7 140 29.3
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.4e-09 68.2 143 30.1
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 4.0e-09 66.6 147 28.6
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 1.1e-06 58.5 50 46.0


User provided reference genes

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