Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_14480 Physcomitrium patens HOM05D016040 ORTHO05D005718 2.0e-108 396.4 297 100.0
Pp3c6_1990 Physcomitrium patens HOM05D016040 ORTHO05D005718 1.7e-67 260.4 297 55.2
Pp3c16_19750 Physcomitrium patens HOM05D016040 ORTHO05D005718 5.5e-26 122.5 102 59.8
Pp3c6_4360 Physcomitrium patens HOM05D016040 ORTHO05D005718 5.5e-26 122.5 102 59.8
Pp3c5_25220 Physcomitrium patens HOM05D016040 ORTHO05D005718 2.1e-25 120.6 102 58.8
Pp3c25_11150 Physcomitrium patens HOM05D016040 ORTHO05D005718 2.8e-25 120.2 107 56.1
Gohir.A08G108700 Gossypium hirsutum HOM05D000262 ORTHO05D005718 9.5e-10 68.6 73 45.2
Gohir.D08G121400 Gossypium hirsutum HOM05D000262 ORTHO05D005718 9.5e-10 68.6 73 45.2
Gorai.004G128100 Gossypium raimondii HOM05D000262 ORTHO05D005718 9.5e-10 68.6 73 45.2
Gorai.008G261300 Gossypium raimondii HOM05D000262 ORTHO05D005718 6.2e-09 65.9 93 37.6
Pp3c19_20160 Physcomitrium patens HOM05D016040 ORTHO05D317457 6.2e-09 65.9 68 52.9
MELO3C005805.2 Cucumis melo HOM05D000262 ORTHO05D005718 8.0e-09 65.5 72 45.8
Potri.011G149500 Populus trichocarpa HOM05D000262 ORTHO05D005718 8.0e-09 65.5 72 43.1
Gohir.D12G243800 Gossypium hirsutum HOM05D000262 ORTHO05D005718 1.1e-08 65.1 72 41.7
MSTRG.24881 Avicennia marina HOM05D000262 ORTHO05D005718 1.4e-08 64.7 73 42.5
HanXRQChr14g0462111 Helianthus annuus HOM05D000262 ORTHO05D005718 1.4e-08 64.7 91 38.5
Sc22g0004650 Simmondsia chinensis HOM05D000262 ORTHO05D005718 1.4e-08 64.7 72 43.1
TWI81G0277 Tripterygium wilfordii HOM05D000262 ORTHO05D005718 1.4e-08 64.7 72 41.7
MSTRG.13691 Avicennia marina HOM05D000262 ORTHO05D005718 1.8e-08 64.3 72 43.1
Haze_09218 Corylus avellana HOM05D000262 ORTHO05D005718 1.8e-08 64.3 72 41.7
Gohir.D09G182200 Gossypium hirsutum HOM05D000262 ORTHO05D005718 1.8e-08 64.3 72 44.4
Gorai.006G204300 Gossypium raimondii HOM05D000262 ORTHO05D005718 1.8e-08 64.3 72 44.4
Potri.001G452400 Populus trichocarpa HOM05D000262 ORTHO05D005718 1.8e-08 64.3 72 41.7
Cfa011886 Carpinus fangiana HOM05D000262 ORTHO05D005718 2.3e-08 63.9 72 41.7
COL.COLO4_10846 Corchorus olitorius HOM05D000262 ORTHO05D005718 2.3e-08 63.9 72 41.7
CsaV3_5G001440 Cucumis sativus L. HOM05D000262 ORTHO05D005718 2.3e-08 63.9 72 44.4
Nn1g05265 Nelumbo nucifera HOM05D000262 ORTHO05D005718 2.3e-08 63.9 78 42.3
Peaxi162Scf00117g00211 Petunia axillaris HOM05D000262 ORTHO05D005718 2.3e-08 63.9 72 40.3
Thecc.03G215500 Theobroma cacao HOM05D000262 ORTHO05D005718 2.3e-08 63.9 72 41.7
Zm00001eb001530 Zea mays HOM05D000262 ORTHO05D005718 2.3e-08 63.9 72 43.1
Actinidia22231 Actinidia chinensis HOM05D000262 ORTHO05D005718 3.1e-08 63.5 72 43.1
CAN.G390.33 Capsicum annuum HOM05D000262 ORTHO05D005718 3.1e-08 63.5 72 40.3
Eucgr.E01094 Eucalyptus grandis HOM05D000262 ORTHO05D005718 3.1e-08 63.5 78 42.3
FAN08G1867 Fragaria x ananassa HOM05D000262 ORTHO05D005718 3.1e-08 63.5 72 41.7
Manes.02G000100 Manihot esculenta HOM05D000262 ORTHO05D005718 3.1e-08 63.5 72 40.3
Pp3c6_5260 Physcomitrium patens HOM05D011764 ORTHO05D017075 3.1e-08 63.5 103 34.0
TAR374G1577 Trochodendron aralioides HOM05D000262 ORTHO05D005718 3.1e-08 63.5 72 41.7
CiPaw.12G074400 Carya illinoinensis HOM05D000262 ORTHO05D005718 4.0e-08 63.2 72 41.7
PGR042G3739 Punica granatum HOM05D000262 ORTHO05D005718 4.0e-08 63.2 72 41.7
Rhsim02G0254800 Rhododendron simsii HOM05D000262 ORTHO05D005718 4.0e-08 63.2 70 42.9
Atru.chr9.1830 Acer truncatum HOM05D000262 ORTHO05D005718 5.2e-08 62.8 70 42.9
BcaC08g44591 Brassica carinata HOM05D000262 ORTHO05D005718 5.2e-08 62.8 78 41.0
A07p21160 Brassica napus HOM05D000262 ORTHO05D005718 5.2e-08 62.8 78 41.0
C06p20620 Brassica napus HOM05D000262 ORTHO05D005718 5.2e-08 62.8 78 41.0
BraA07t29802Z Brassica rapa HOM05D000262 ORTHO05D005718 5.2e-08 62.8 78 41.0
Nitab4.5_0006317g0040 Nicotiana tabacum HOM05D000262 ORTHO05D005718 5.2e-08 62.8 72 40.3
Os03g0120400 Oryza sativa ssp. japonica HOM05D000262 ORTHO05D005718 5.2e-08 62.8 72 41.7
QL02p027086 Quercus lobata HOM05D000262 ORTHO05D005718 5.2e-08 62.8 72 40.3
Sed0003133 Sechium edule HOM05D000262 ORTHO05D005718 5.2e-08 62.8 71 42.3
Aa31LG9G60 Aethionema arabicum HOM05D000262 ORTHO05D005718 6.8e-08 62.4 78 41.0
Cpa.g.sc37.110 Carica papaya HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 40.3
Duzib068G0734 Durio zibethinus HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 41.7
Thhalv10027957m.g Eutrema salsugineum HOM05D000262 ORTHO05D005718 6.8e-08 62.4 78 41.0
FAN13G3243 Fragaria x ananassa HOM05D000262 ORTHO05D005718 6.8e-08 62.4 70 41.4
HanXRQChr17g0534061 Helianthus annuus HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 43.1
Lsat_1_v5_gn_3_13421 Lactuca sativa HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 41.7
Nn3g18768 Nelumbo nucifera HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 41.7
Pp3c25_11290 Physcomitrium patens HOM05D011764 ORTHO05D017075 6.8e-08 62.4 99 35.4
Sabra16G0305600 Salix brachista HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 40.3
Sp7g00010 Schrenkiella parvula HOM05D000262 ORTHO05D005718 6.8e-08 62.4 78 41.0
Sc22g0000100 Simmondsia chinensis HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 41.7
Sopen12g024310 Solanum pennellii HOM05D000262 ORTHO05D005718 6.8e-08 62.4 72 40.3
EL10Ac5g12392 Beta vulgaris HOM05D000262 ORTHO05D005718 8.9e-08 62.0 72 40.3
BcaB02g07861 Brassica carinata HOM05D000262 ORTHO05D005718 8.9e-08 62.0 78 41.0
Carub.0008s0837 Capsella rubella HOM05D000262 ORTHO05D005718 8.9e-08 62.0 78 41.0
CARHR213490 Cardamine hirsuta HOM05D000262 ORTHO05D005718 8.9e-08 62.0 78 39.7
Ciclev10022498m.g Citrus clementina HOM05D000262 ORTHO05D005718 8.9e-08 62.0 72 41.7
Cc08_g17060 Coffea canephora HOM05D000262 ORTHO05D005718 8.9e-08 62.0 78 39.7
Dinv18782 Davidia involucrata HOM05D000262 ORTHO05D005718 8.9e-08 62.0 72 41.7
ECA246G3260 Erigeron canadensis HOM05D000262 ORTHO05D005718 8.9e-08 62.0 72 41.7
FvH4_5g10380 Fragaria vesca HOM05D000262 ORTHO05D005718 8.9e-08 62.0 70 41.4
FAN04G2412 Fragaria x ananassa HOM05D000262 ORTHO05D005718 8.9e-08 62.0 70 41.4
FAN18G1562 Fragaria x ananassa HOM05D000262 ORTHO05D005718 8.9e-08 62.0 70 41.4
Manes.01G000341 Manihot esculenta HOM05D000262 ORTHO05D005718 8.9e-08 62.0 69 43.5
Prupe.5G135200 Prunus persica HOM05D000262 ORTHO05D005718 8.9e-08 62.0 72 41.7
TAR629G3343 Trochodendron aralioides HOM05D000262 ORTHO05D005718 8.9e-08 62.0 72 43.1
GSVIVG01019700001 Vitis vinifera HOM05D000262 ORTHO05D005718 8.9e-08 62.0 72 43.1
Aqoxy5G04359 Aquilegia oxysepala HOM05D000262 ORTHO05D005718 1.2e-07 61.6 72 41.7
CAN.G1427.7 Capsicum annuum HOM05D000262 ORTHO05D005718 1.2e-07 61.6 72 38.9
CiPaw.11G108600 Carya illinoinensis HOM05D000262 ORTHO05D005718 1.2e-07 61.6 72 40.3
Lalb_Chr06g0168551 Lupinus albus HOM05D000262 ORTHO05D005718 1.2e-07 61.6 72 37.5
MBI04_g07881_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D005718 1.2e-07 61.6 72 43.1
PGSC0003DMG400005000 Solanum tuberosum HOM05D000262 ORTHO05D005718 1.2e-07 61.6 72 38.9
CSS0011979 Camellia sinensis var. sinensis HOM05D000262 ORTHO05D005718 1.5e-07 61.2 72 41.7
CSS0032304 Camellia sinensis var. sinensis HOM05D000262 ORTHO05D005718 1.5e-07 61.2 72 41.7
AUR62007086 Chenopodium quinoa HOM05D000262 ORTHO05D005718 1.5e-07 61.2 72 40.3
AUR62019949 Chenopodium quinoa HOM05D000262 ORTHO05D005718 1.5e-07 61.2 72 40.3
Medtr1g078090 Medicago truncatula HOM05D000262 ORTHO05D005718 1.5e-07 61.2 72 40.3
Oeu022024.1 Olea europaea HOM05D000262 ORTHO05D005718 1.5e-07 61.2 66 43.9
AL3G51430 Arabidopsis lyrata HOM05D000262 ORTHO05D005718 2.0e-07 60.8 72 38.9
arahy.Tifrunner.gnm1.ann1.PE90UA Arachis hypogaea HOM05D000262 ORTHO05D005718 2.0e-07 60.8 72 38.9
CARHR256180 Cardamine hirsuta HOM05D000262 ORTHO05D005718 2.0e-07 60.8 72 43.1
Duzib205G0444 Durio zibethinus HOM05D000262 ORTHO05D005718 2.0e-07 60.8 72 38.9
Hma1.2p1_0198F.1_g085225 Hydrangea macrophylla HOM05D000262 ORTHO05D005718 2.0e-07 60.8 72 40.3
Hma1.2p1_0456F.1_g156840 Hydrangea macrophylla HOM05D000262 ORTHO05D005718 2.0e-07 60.8 72 40.3
Os10g0537400 Oryza sativa ssp. japonica HOM05D000262 ORTHO05D005718 2.0e-07 60.8 75 40.0
Pp3c18_12580 Physcomitrium patens HOM05D016040 ORTHO05D319258 2.0e-07 60.8 94 40.4
PGSC0003DMG400030875 Solanum tuberosum HOM05D000262 ORTHO05D005718 2.0e-07 60.8 72 38.9
CANSAT21G0292 Cannabis sativa HOM05D000262 ORTHO05D005718 2.6e-07 60.5 72 38.9
Ca_09960_v3 Cicer arietinum L. HOM05D000262 ORTHO05D005718 2.6e-07 60.5 72 38.9
Glyma.10G171800 Glycine max HOM05D000262 ORTHO05D005718 2.6e-07 60.5 72 40.3
Phvul.007G117600 Phaseolus vulgaris HOM05D000262 ORTHO05D005718 2.6e-07 60.5 72 40.3
Sopen08g024520 Solanum pennellii HOM05D000262 ORTHO05D005718 2.6e-07 60.5 72 37.5
MD06G1124600 Malus domestica HOM05D000262 ORTHO05D005718 3.4e-07 60.1 70 42.9
MD14G1141600 Malus domestica HOM05D000262 ORTHO05D005718 3.4e-07 60.1 72 41.7
Nitab4.5_0000450g0070 Nicotiana tabacum HOM05D000262 ORTHO05D005718 3.4e-07 60.1 69 42.0
Pp3c9_9100 Physcomitrium patens HOM05D011764 ORTHO05D310360 3.4e-07 60.1 69 52.2
RcHm_v2.0_Chr7g0187841 Rosa chinensis HOM05D000262 ORTHO05D005718 3.4e-07 60.1 72 40.3
unitig_62.g23262 Utricularia gibba HOM05D000262 ORTHO05D005718 3.4e-07 60.1 71 42.3
Carub.0006s2915 Capsella rubella HOM05D000262 ORTHO05D005718 4.4e-07 59.7 72 41.7
Sp6g07000 Schrenkiella parvula HOM05D000262 ORTHO05D005718 4.4e-07 59.7 72 40.3
Lj2A150T33 Lonicera japonica HOM05D000262 ORTHO05D005718 5.8e-07 59.3 71 39.4
Pp3c22_16710 Physcomitrium patens HOM05D011764 ORTHO05D308383 5.8e-07 59.3 64 50.0
TWI15G1113 Tripterygium wilfordii HOM05D000262 ORTHO05D005718 5.8e-07 59.3 72 38.9
vmacro11476 Vaccinium macrocarpon HOM05D000262 ORTHO05D005718 5.8e-07 59.3 67 43.3
Aa31LG9G11590 Aethionema arabicum HOM05D000262 ORTHO05D005718 7.5e-07 58.9 72 40.3
ClCG01G001310 Citrullus lanatus HOM05D000262 ORTHO05D005718 7.5e-07 58.9 73 43.8
Gohir.A09G187400 Gossypium hirsutum HOM05D000262 ORTHO05D005718 7.5e-07 58.9 75 41.3
HPP92_022293 Vanilla planifolia HOM05D000262 ORTHO05D005718 7.5e-07 58.9 71 42.3
VMungo0720G1679 Vigna mungo HOM05D000262 ORTHO05D005718 7.5e-07 58.9 72 38.9
CDE02G3827 Ceratophyllum demersum HOM05D000262 ORTHO05D005718 9.8e-07 58.5 72 41.7
Migut.A01061 Erythranthe guttata HOM05D000262 ORTHO05D005718 9.8e-07 58.5 72 37.5
Lj5g0023862 Lotus japonicus HOM05D000262 ORTHO05D005718 9.8e-07 58.5 72 38.9
Pp3c25_11360 Physcomitrium patens HOM05D014505 ORTHO05D030131 9.8e-07 58.5 98 40.8
BcaB01g01477 Brassica carinata HOM05D000262 ORTHO05D005718 1.7e-06 57.8 72 38.9
BcaC04g21039 Brassica carinata HOM05D000262 ORTHO05D005718 1.7e-06 57.8 72 38.9
A09p28680 Brassica napus HOM05D000262 ORTHO05D005718 1.7e-06 57.8 72 38.9
C09p36410 Brassica napus HOM05D000262 ORTHO05D005718 1.7e-06 57.8 72 38.9
Pp3c25_11210 Physcomitrium patens HOM05D011764 ORTHO05D026047 1.7e-06 57.8 61 49.2
Pp3c24_5200 Physcomitrium patens HOM05D011764 ORTHO05D318183 2.2e-06 57.4 93 37.6
THA.LOC104815464 Tarenaya hassleriana HOM05D000262 ORTHO05D005718 2.2e-06 57.4 72 37.5
ATR0579G030 Amborella trichopoda HOM05D000262 ORTHO05D005718 2.9e-06 57.0 72 40.3
Gohir.A02G095101 Gossypium hirsutum HOM05D000262 ORTHO05D005718 2.9e-06 57.0 71 38.0
Thhalv10029456m.g Eutrema salsugineum HOM05D000262 ORTHO05D005718 3.7e-06 56.6 72 37.5
Mapoly0040s0108 Marchantia polymorpha HOM05D033683 ORTHO05D030131 3.7e-06 56.6 77 42.9
Pp3c18_12600 Physcomitrium patens HOM05D016040 ORTHO05D314096 3.7e-06 56.6 94 39.4
THA.LOC104809291 Tarenaya hassleriana HOM05D000262 ORTHO05D005718 4.9e-06 56.2 72 34.7
AT4G10465 Arabidopsis thaliana HOM05D000262 ORTHO05D005718 8.3e-06 55.5 72 41.7
CDE04G2794 Ceratophyllum demersum HOM05D000262 ORTHO05D005718 8.3e-06 55.5 72 38.9
Gohir.A12G242800 Gossypium hirsutum HOM05D000262 ORTHO05D005718 8.3e-06 55.5 60 43.3
Pp3c11_9210 Physcomitrium patens HOM05D011764 ORTHO05D026047 8.3e-06 55.5 61 45.9


User provided reference genes

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