Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_1330 Physcomitrium patens HOM05D003632 ORTHO05D005497 9.4e-56 219.9 109 100.0
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 4.9e-20 101.3 95 60.0
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 5.6e-16 87.8 95 53.7
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 2.1e-15 85.9 94 52.1
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 2.1e-15 85.9 94 52.1
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 3.6e-15 85.1 94 52.1
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 3.6e-15 85.1 94 53.2
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 6.1e-15 84.3 94 50.0
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 8.0e-15 84.0 95 50.5
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 8.0e-15 84.0 94 51.1
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 1.0e-14 83.6 94 51.1
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 1.4e-14 83.2 94 51.1
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 1.4e-14 83.2 94 51.1
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 1.4e-14 83.2 94 51.1
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 1.4e-14 83.2 94 51.1
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 2.3e-14 82.4 94 48.9
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 2.3e-14 82.4 94 51.1
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 2.3e-14 82.4 94 50.0
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 2.3e-14 82.4 94 50.0
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 2.3e-14 82.4 94 50.0
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 3.0e-14 82.0 94 51.1
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.0e-14 82.0 94 51.1
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.0e-14 82.0 94 51.1
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.0e-14 82.0 94 51.1
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.0e-14 82.0 94 51.1
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 4.0e-14 81.6 94 50.0
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 4.0e-14 81.6 94 50.0
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 4.0e-14 81.6 94 51.1
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 4.0e-14 81.6 94 52.1
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 4.0e-14 81.6 94 50.0
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 5.2e-14 81.3 94 48.9
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 5.2e-14 81.3 94 48.9
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.2e-14 81.3 94 50.0
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 5.2e-14 81.3 94 51.1
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 5.2e-14 81.3 94 50.0
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 6.8e-14 80.9 94 50.0
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 6.8e-14 80.9 94 50.0
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 6.8e-14 80.9 94 47.9
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 6.8e-14 80.9 94 48.9
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 6.8e-14 80.9 94 48.9
SMO117G0011 Selaginella moellendorffii HOM05D003632 ORTHO05D005497 6.8e-14 80.9 94 47.9
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 48.9
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 46.8
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 48.9
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 50.0
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 50.0
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 48.9
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 50.0
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 8.9e-14 80.5 94 48.9
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 1.2e-13 80.1 94 50.0
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 1.2e-13 80.1 95 47.4
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 1.2e-13 80.1 95 47.4
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 1.2e-13 80.1 95 47.4
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 1.2e-13 80.1 95 47.4
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 1.2e-13 80.1 95 47.4
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 1.2e-13 80.1 95 48.4
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 1.2e-13 80.1 94 47.9
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 1.2e-13 80.1 94 50.0
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 1.2e-13 80.1 94 47.9
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 1.2e-13 80.1 94 50.0
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 2.0e-13 79.3 94 48.9
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 2.0e-13 79.3 95 48.4
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 2.0e-13 79.3 94 48.9
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 2.0e-13 79.3 94 46.8
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 2.0e-13 79.3 94 48.9
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 2.6e-13 79.0 94 47.9
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 2.6e-13 79.0 94 48.9
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 2.6e-13 79.0 94 48.9
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 2.6e-13 79.0 95 47.4
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 2.6e-13 79.0 95 47.4
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 3.4e-13 78.6 94 46.8
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 3.4e-13 78.6 94 48.9
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 4.4e-13 78.2 94 47.9
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 4.4e-13 78.2 94 47.9
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 4.4e-13 78.2 94 47.9
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 4.4e-13 78.2 94 48.9
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 4.4e-13 78.2 94 48.9
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 4.4e-13 78.2 94 46.8
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 4.4e-13 78.2 94 47.9
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 5.8e-13 77.8 94 45.7
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 5.8e-13 77.8 95 46.3
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 5.8e-13 77.8 95 47.4
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 5.8e-13 77.8 94 48.9
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 5.8e-13 77.8 94 47.9
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 5.8e-13 77.8 95 47.4
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 7.5e-13 77.4 94 46.8
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 7.5e-13 77.4 95 46.3
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 7.5e-13 77.4 95 47.4
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 7.5e-13 77.4 94 47.9
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 7.5e-13 77.4 95 47.4
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 7.5e-13 77.4 95 46.3
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 7.5e-13 77.4 94 46.8
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 7.5e-13 77.4 94 48.9
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 9.8e-13 77.0 94 44.7
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 1.3e-12 76.6 95 46.3
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 1.7e-12 76.3 94 44.7
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 1.7e-12 76.3 94 47.9
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 2.2e-12 75.9 94 44.7
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 2.2e-12 75.9 94 46.8
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 2.9e-12 75.5 94 46.8
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 3.7e-12 75.1 94 45.7
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 3.7e-12 75.1 94 46.8
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 4.9e-12 74.7 95 46.3
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 4.9e-12 74.7 95 46.3
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 6.4e-12 74.3 94 42.6
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 6.4e-12 74.3 94 45.7
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 8.3e-12 73.9 94 45.7
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 8.3e-12 73.9 94 47.9
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 8.3e-12 73.9 94 46.8
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 8.3e-12 73.9 95 46.3
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 8.3e-12 73.9 94 46.8
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 8.3e-12 73.9 94 46.8
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 8.3e-12 73.9 94 46.8
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 1.1e-11 73.6 110 40.9
SEGI_14127 Sequoiadendron giganteum HOM05D003632 ORTHO05D005497 1.1e-11 73.6 64 62.5
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 1.9e-11 72.8 95 46.3
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 3.2e-11 72.0 94 43.6
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 4.1e-11 71.6 82 51.2
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 4.1e-11 71.6 94 44.7
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 4.1e-11 71.6 94 44.7
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 1.2e-10 70.1 94 41.5
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 2.0e-10 69.3 112 38.4
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 2.0e-10 69.3 94 39.4
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 1.0e-09 67.0 94 39.4
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 1.3e-09 66.6 94 39.4
CAN.G1425.17 Capsicum annuum HOM05D003632 ORTHO05D001148 1.5e-08 63.2 53 58.5


User provided reference genes

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