Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 9.9e-109 396.7 192 100.0
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 2.3e-57 226.1 182 57.7
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.5e-56 223.4 186 57.0
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.3e-56 222.2 182 56.6
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 4.3e-56 221.9 186 56.5
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.7e-55 219.9 182 56.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 5.9e-53 211.5 183 53.6
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.0e-52 210.7 179 55.9
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.7e-52 209.9 182 54.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 3.8e-52 208.8 182 52.7
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 4.2e-51 205.3 182 54.9
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 9.4e-51 204.1 182 52.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.2e-50 203.8 182 53.8
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.6e-50 203.4 182 53.3
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.6e-50 203.4 185 53.0
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.6e-50 203.4 182 53.8
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.1e-50 203.0 182 52.2
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.1e-50 203.0 182 53.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.7e-50 202.6 182 53.8
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.7e-50 202.6 182 53.8
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.7e-50 202.6 182 53.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 3.6e-50 202.2 182 53.3
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 3.6e-50 202.2 183 51.4
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.7e-50 201.8 182 52.2
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 4.7e-50 201.8 185 53.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 6.1e-50 201.4 185 50.8
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 6.1e-50 201.4 183 51.4
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 7.9e-50 201.1 182 52.7
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 7.9e-50 201.1 184 51.6
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.8e-49 199.9 182 53.3
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 3.0e-49 199.1 182 51.1
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 3.9e-49 198.7 181 51.9
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 3.9e-49 198.7 182 49.5
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.1e-49 198.4 182 53.3
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 6.7e-49 198.0 183 51.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 8.8e-49 197.6 182 51.6
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.1e-48 197.2 182 52.7
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.5e-48 196.8 182 52.7
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.0e-48 196.4 182 53.8
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.3e-48 195.7 182 53.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 4.4e-48 195.3 185 50.3
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 4.4e-48 195.3 182 51.6
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 7.4e-48 194.5 184 50.5
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 9.7e-48 194.1 182 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.3e-47 193.7 182 50.5
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 2.8e-47 192.6 182 52.7
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 3.7e-47 192.2 184 49.5
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 3.7e-47 192.2 182 50.0
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 4.8e-47 191.8 179 53.6
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.8e-47 191.8 184 50.0
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 6.3e-47 191.4 182 48.9
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 8.2e-47 191.0 182 48.9
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.1e-46 190.7 184 48.9
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.8e-46 189.9 183 53.6
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.8e-46 189.9 182 51.1
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.8e-46 189.9 184 49.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.4e-46 189.5 182 50.5
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.4e-46 189.5 182 51.1
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.4e-46 189.5 182 48.9
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 4.1e-46 188.7 182 50.0
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.1e-46 188.7 182 48.4
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.0e-46 188.0 182 47.8
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 7.0e-46 188.0 182 50.0
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 7.0e-46 188.0 182 51.1
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 9.1e-46 187.6 182 50.5
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.1e-46 187.6 182 50.0
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 9.1e-46 187.6 184 49.5
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 9.1e-46 187.6 182 50.0
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.2e-45 187.2 182 51.6
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 2.0e-45 186.4 183 53.0
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.0e-45 186.4 182 51.6
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.0e-45 186.4 182 47.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.6e-45 186.0 182 49.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.4e-45 185.7 181 51.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.4e-45 185.7 188 47.3
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 4.5e-45 185.3 182 51.6
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 4.5e-45 185.3 182 48.4
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 5.9e-45 184.9 182 52.2
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 7.7e-45 184.5 182 48.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 7.7e-45 184.5 184 48.4
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 7.7e-45 184.5 184 48.4
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 7.7e-45 184.5 179 47.5
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.0e-44 184.1 182 51.6
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.0e-44 184.1 182 51.6
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.0e-44 184.1 182 48.4
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.0e-44 184.1 184 49.5
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.0e-44 184.1 182 47.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.3e-44 183.7 182 48.9
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.3e-44 183.7 182 48.9
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.3e-44 183.7 182 47.3
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.3e-44 183.7 182 51.1
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.3e-44 183.7 184 48.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.7e-44 183.3 182 48.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 2.2e-44 183.0 182 51.1
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 2.2e-44 183.0 182 48.9
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.9e-44 182.6 182 48.9
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.8e-44 182.2 182 48.9
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 5.0e-44 181.8 182 48.4
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 5.0e-44 181.8 190 46.8
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 6.5e-44 181.4 182 49.5
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 8.5e-44 181.0 182 47.3
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.1e-43 180.6 166 52.4
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.1e-43 180.6 182 47.8
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.9e-43 179.9 182 45.6
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 4.2e-43 178.7 188 45.7
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 7.2e-43 177.9 182 46.7
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 9.4e-43 177.6 184 47.3
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 8.0e-42 174.5 182 46.2
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.8e-41 173.3 163 52.8
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 3.0e-41 172.6 179 46.9
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.5e-40 170.2 149 53.7
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.0e-40 169.9 182 46.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.2e-39 166.4 203 40.9
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.8e-39 165.2 198 43.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 7.0e-38 161.4 163 49.7
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.0e-37 159.8 184 45.7
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 6.5e-36 154.8 184 46.2
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 7.2e-35 151.4 150 48.0
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.4e-33 147.1 166 45.8
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 6.7e-33 144.8 145 48.3
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.8e-33 144.4 148 48.6
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.6e-32 142.9 185 41.1
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.7e-31 140.2 182 41.8
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 3.7e-31 139.0 202 40.6
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.1e-30 135.6 104 60.6
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.7e-28 130.2 160 46.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.2e-26 124.0 182 40.7
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 5.7e-24 115.2 104 51.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 9.8e-24 114.4 112 50.0
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 4.8e-23 112.1 190 34.2
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.3e-23 111.3 148 43.2
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.0e-21 106.7 116 47.4
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 4.2e-19 99.0 167 34.1
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 5.2e-17 92.0 157 34.4
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.7e-15 85.9 98 48.0
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.7e-13 79.7 175 30.3
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 3.3e-11 72.8 162 30.9
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 4.3e-11 72.4 76 50.0
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.2e-10 70.9 71 49.3
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.8e-09 67.0 60 46.7
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 6.4e-07 58.5 73 38.4
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 8.3e-07 58.2 76 44.7


User provided reference genes

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