Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.0e-118 430.3 241 100.0
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 6.7e-54 214.9 157 88.5
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 9.0e-35 151.4 112 73.2
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 2.7e-23 113.2 120 66.7
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 5.2e-22 109.0 152 55.9
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 8.8e-22 108.2 112 68.8
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 8.8e-22 108.2 121 64.5
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 3.3e-21 106.3 113 67.3
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 5.7e-21 105.5 114 65.8
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 5.7e-21 105.5 114 65.8
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 5.7e-21 105.5 114 65.8
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 7.4e-21 105.1 112 65.2
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 9.7e-21 104.8 112 66.1
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 9.7e-21 104.8 109 67.0
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.3e-20 104.4 120 64.2
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 1.3e-20 104.4 112 67.0
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.7e-20 104.0 112 64.3
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 1.7e-20 104.0 112 67.0
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 2.2e-20 103.6 112 67.0
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 2.2e-20 103.6 146 54.1
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 2.2e-20 103.6 114 66.7
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 2.2e-20 103.6 116 66.4
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 2.8e-20 103.2 103 69.9
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 2.8e-20 103.2 122 62.3
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 3.7e-20 102.8 103 69.9
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 4.8e-20 102.4 112 67.0
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 4.8e-20 102.4 112 67.0
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 4.8e-20 102.4 112 67.0
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 6.3e-20 102.1 119 61.3
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 6.3e-20 102.1 122 63.1
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 6.3e-20 102.1 113 64.6
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.3e-20 102.1 112 66.1
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 8.2e-20 101.7 112 67.0
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 8.2e-20 101.7 112 66.1
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 8.2e-20 101.7 112 66.1
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 8.2e-20 101.7 112 65.2
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 1.1e-19 101.3 103 68.9
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.4e-19 100.9 110 65.5
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 1.4e-19 100.9 118 64.4
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 1.4e-19 100.9 112 64.3
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.4e-19 100.9 121 61.2
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 1.8e-19 100.5 163 52.1
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 1.8e-19 100.5 112 63.4
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.8e-19 100.5 102 70.6
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.8e-19 100.5 112 65.2
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 2.4e-19 100.1 147 55.1
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 2.4e-19 100.1 122 62.3
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 65.5
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 64.5
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 65.5
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 64.5
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 64.5
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 65.5
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 64.5
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 65.5
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 65.5
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.1e-19 99.8 110 65.5
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 5.3e-19 99.0 111 62.2
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 5.3e-19 99.0 121 61.2
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 7.0e-19 98.6 150 54.7
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 7.0e-19 98.6 112 63.4
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 7.0e-19 98.6 110 64.5
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 7.0e-19 98.6 109 66.1
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 9.1e-19 98.2 113 62.8
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 1.2e-18 97.8 110 62.7
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 1.2e-18 97.8 103 68.0
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 1.2e-18 97.8 110 63.6
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.2e-18 97.8 122 61.5
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.6e-18 97.4 118 62.7
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.6e-18 97.4 113 62.8
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 1.6e-18 97.4 114 63.2
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 2.0e-18 97.1 110 61.8
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 2.6e-18 96.7 110 61.8
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 2.6e-18 96.7 105 65.7
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 2.6e-18 96.7 116 59.5
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 2.6e-18 96.7 141 52.5
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 2.6e-18 96.7 102 66.7
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 3.5e-18 96.3 112 62.5
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 4.5e-18 95.9 113 62.8
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 4.5e-18 95.9 114 61.4
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 5.9e-18 95.5 113 62.8
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 5.9e-18 95.5 103 67.0
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 7.7e-18 95.1 103 68.0
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 1.0e-17 94.7 113 61.9
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.3e-17 94.4 101 67.3
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.3e-17 94.4 113 62.8
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 1.7e-17 94.0 117 59.8
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 2.9e-17 93.2 106 64.2
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 2.9e-17 93.2 117 60.7
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.9e-17 93.2 117 60.7
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.9e-17 93.2 117 60.7
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 5.0e-17 92.4 103 67.0
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 6.5e-17 92.0 121 58.7
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 2.5e-16 90.1 68 69.1
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 2.5e-16 90.1 106 62.3
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 4.2e-16 89.4 103 64.1
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 5.5e-16 89.0 107 64.5
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 7.2e-16 88.6 117 58.1
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 9.4e-16 88.2 83 62.7
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 9.4e-16 88.2 97 67.0
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 9.4e-16 88.2 155 53.5
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.2e-15 87.8 102 64.7
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 3.6e-15 86.3 96 66.7
Pp3c2_18240 Physcomitrium patens HOM05D006349 ORTHO05D317458 3.6e-15 86.3 52 80.8
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 8.0e-15 85.1 97 63.9
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.0e-14 84.7 74 58.1
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.8e-14 84.0 99 62.6
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 3.0e-14 83.2 121 54.5
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 5.2e-14 82.4 112 55.4
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 1.7e-12 77.4 112 51.8
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 2.2e-12 77.0 110 59.1
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.1e-11 74.7 112 53.6
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.4e-11 74.3 107 54.2
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 1.4e-11 74.3 121 51.2
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 4.1e-11 72.8 107 51.4
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.5e-10 69.7 113 54.0
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 7.7e-10 68.6 94 43.6
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 5.0e-09 65.9 56 57.1


User provided reference genes

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