Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.0e-194 682.2 334 100.0
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.2e-130 470.3 331 67.7
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 4.1e-102 375.6 332 57.8
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 7.0e-102 374.8 329 57.4
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 1.2e-101 374.0 334 57.8
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 3.8e-100 369.0 326 56.7
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 3.2e-99 365.9 338 54.4
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 3.2e-99 365.9 328 57.0
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 5.5e-99 365.2 331 56.5
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.6e-98 363.6 328 55.2
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.1e-98 363.2 328 56.7
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 2.7e-98 362.8 328 57.9
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 3.6e-98 362.5 337 55.8
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 4.7e-98 362.1 327 55.4
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.0e-97 360.9 333 56.2
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.0e-97 360.9 328 56.4
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.0e-97 360.9 332 56.0
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.0e-97 360.9 328 56.4
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.8e-97 360.1 326 54.3
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 2.3e-97 359.8 310 61.3
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 4.0e-97 359.0 330 56.4
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 4.0e-97 359.0 327 56.3
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 6.8e-97 358.2 327 56.9
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 6.8e-97 358.2 332 55.4
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 8.8e-97 357.8 326 55.5
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 8.8e-97 357.8 331 57.1
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.2e-96 357.5 330 57.0
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.2e-96 357.5 328 56.1
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.2e-96 357.5 329 56.5
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.5e-96 357.1 334 55.4
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.5e-96 357.1 328 55.5
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.5e-96 357.1 332 55.7
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.0e-96 356.7 333 55.6
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 2.0e-96 356.7 327 53.8
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 2.6e-96 356.3 332 54.8
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 2.6e-96 356.3 326 54.9
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 4.4e-96 355.5 333 56.8
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 5.7e-96 355.1 328 55.2
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 5.7e-96 355.1 331 54.1
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 5.7e-96 355.1 328 55.2
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 7.5e-96 354.8 330 55.5
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 7.5e-96 354.8 328 55.2
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 9.8e-96 354.4 336 54.2
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.3e-95 354.0 332 56.3
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.3e-95 354.0 332 56.3
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.3e-95 354.0 337 55.5
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 1.3e-95 354.0 333 55.6
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 1.7e-95 353.6 328 54.9
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.7e-95 353.6 334 55.4
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.7e-95 353.6 329 57.1
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 2.2e-95 353.2 330 57.6
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 2.8e-95 352.8 364 52.2
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 3.7e-95 352.4 332 55.1
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 3.7e-95 352.4 328 55.8
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 4.8e-95 352.1 329 53.2
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 4.8e-95 352.1 329 54.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 4.8e-95 352.1 332 55.7
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 8.3e-95 351.3 328 56.1
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.1e-94 350.9 328 55.5
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.1e-94 350.9 329 54.1
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.1e-94 350.9 326 54.0
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.4e-94 350.5 244 66.0
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.4e-94 350.5 328 54.0
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.8e-94 350.1 328 55.5
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 1.8e-94 350.1 331 53.5
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.8e-94 350.1 328 54.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 2.4e-94 349.7 331 54.4
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 3.1e-94 349.4 326 54.3
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.1e-94 349.4 326 56.4
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 4.1e-94 349.0 329 55.9
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 4.1e-94 349.0 329 55.9
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 5.4e-94 348.6 291 57.0
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 9.1e-94 347.8 326 53.7
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 9.1e-94 347.8 328 55.5
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 9.1e-94 347.8 330 54.2
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.2e-93 347.4 330 54.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.6e-93 347.1 240 65.4
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.0e-93 346.7 326 53.4
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.5e-93 345.5 328 54.0
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 5.9e-93 345.1 327 54.4
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 7.7e-93 344.7 331 52.9
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.0e-92 344.4 331 52.9
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.0e-92 344.4 322 53.7
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 1.0e-92 344.4 232 68.5
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.2e-92 343.2 303 56.4
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 2.2e-92 343.2 330 54.5
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 2.2e-92 343.2 331 56.8
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 5.0e-92 342.0 251 62.9
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 6.5e-92 341.7 331 53.2
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 8.5e-92 341.3 328 56.4
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.5e-91 339.7 326 56.7
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 3.2e-91 339.3 327 54.1
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.2e-91 339.3 326 56.7
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 4.2e-91 339.0 326 56.7
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 7.2e-91 338.2 332 53.3
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 9.4e-91 337.8 328 52.7
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.2e-90 337.4 326 56.4
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 3.6e-90 335.9 313 55.0
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 1.8e-89 333.6 328 53.0
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 3.0e-89 332.8 326 52.5
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 4.0e-89 332.4 391 46.8
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 5.2e-89 332.0 328 55.5
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 7.5e-88 328.2 326 53.4
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 7.5e-88 328.2 349 49.3
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 1.3e-87 327.4 331 50.8
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.7e-87 327.0 357 51.8
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 4.9e-87 325.5 328 52.1
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 8.3e-87 324.7 275 57.8
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.2e-85 320.9 331 52.6
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.3e-84 317.4 327 51.1
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.5e-80 303.9 243 60.9
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 3.0e-76 289.7 232 59.5
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 4.9e-71 272.3 327 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.8e-65 253.8 173 69.9
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 9.2e-62 241.5 237 56.1
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 8.6e-60 235.0 242 48.8
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.6e-58 229.6 186 62.9
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.3e-57 226.9 225 55.6
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.5e-56 224.2 225 54.7
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 4.9e-55 219.2 182 55.5
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.3e-52 210.3 225 50.7
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.3e-52 210.3 225 50.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 5.1e-52 209.1 226 53.5
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 6.6e-52 208.8 223 49.8
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 3.1e-41 173.3 162 52.5
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.6e-32 143.7 92 71.7
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.1e-30 138.3 183 46.4
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 1.7e-23 114.4 101 54.5
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 3.5e-21 106.7 73 65.8
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 2.7e-13 80.5 52 65.4
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 7.4e-11 72.4 52 69.2


User provided reference genes

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