Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.5e-311 1072.0 538 100.0
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.2e-281 972.6 530 92.3
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.9e-214 748.0 530 72.8
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.4e-182 641.3 535 62.1
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.5e-150 534.6 524 56.5
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.0e-110 404.8 535 43.9
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 4.7e-108 396.0 472 47.0
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.0e-108 395.2 479 43.8
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.4e-104 383.6 494 42.1
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 4.7e-100 369.4 465 43.2
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 3.7e-89 333.2 512 39.5
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 9.3e-56 222.2 429 33.1
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 4.8e-44 183.3 217 43.8
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 3.8e-41 173.7 264 39.0
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.4e-40 171.8 218 39.0
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 7.2e-40 169.5 209 43.5
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.6e-39 168.3 201 43.8
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 2.7e-39 167.5 205 44.4
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 3.6e-39 167.2 268 36.9
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 6.1e-39 166.4 230 40.0
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.9e-39 166.0 212 39.6
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 7.9e-39 166.0 198 41.9
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 1.0e-38 165.6 205 42.0
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 1.0e-38 165.6 224 41.5
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.0e-38 165.6 269 36.4
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 1.4e-38 165.2 215 42.8
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 3.0e-38 164.1 235 37.4
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 5.1e-38 163.3 205 41.5
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 5.1e-38 163.3 203 40.9
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 5.1e-38 163.3 206 39.3
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 5.1e-38 163.3 227 42.7
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 8.8e-38 162.5 209 39.2
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 8.8e-38 162.5 217 39.6
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 1.1e-37 162.2 200 42.5
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.1e-37 162.2 212 42.9
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 2.5e-37 161.0 201 43.3
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 3.3e-37 160.6 201 43.3
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 3.3e-37 160.6 211 44.1
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 3.3e-37 160.6 199 42.7
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 4.3e-37 160.2 213 42.3
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 4.3e-37 160.2 200 42.5
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 5.7e-37 159.8 208 40.4
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 7.4e-37 159.5 206 41.3
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 9.7e-37 159.1 210 41.4
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 9.7e-37 159.1 207 42.0
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 9.7e-37 159.1 225 39.6
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.3e-36 158.7 200 40.5
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 1.7e-36 158.3 211 41.2
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.2e-36 157.9 205 41.0
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 2.2e-36 157.9 232 37.5
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 2.2e-36 157.9 202 42.6
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 2.8e-36 157.5 216 41.2
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 3.7e-36 157.1 202 42.6
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 3.7e-36 157.1 200 41.0
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 4.8e-36 156.8 206 38.8
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 6.3e-36 156.4 221 37.6
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 8.2e-36 156.0 202 42.6
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 8.2e-36 156.0 216 38.0
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 1.1e-35 155.6 233 41.6
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 1.1e-35 155.6 206 42.7
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 1.4e-35 155.2 210 38.6
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.4e-35 155.2 206 40.3
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 1.4e-35 155.2 206 40.3
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 1.4e-35 155.2 231 36.4
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.4e-35 155.2 231 36.4
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 1.4e-35 155.2 220 40.0
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.8e-35 154.8 202 43.1
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.8e-35 154.8 225 38.2
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 1.8e-35 154.8 211 41.2
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.8e-35 154.8 237 36.7
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 2.4e-35 154.5 225 38.2
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 3.1e-35 154.1 217 41.0
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 3.1e-35 154.1 219 37.4
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 3.1e-35 154.1 215 37.7
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 4.1e-35 153.7 206 40.3
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 4.1e-35 153.7 226 39.4
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 5.3e-35 153.3 216 37.5
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 6.9e-35 152.9 201 40.8
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 6.9e-35 152.9 202 41.6
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 6.9e-35 152.9 231 37.2
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 6.9e-35 152.9 215 38.1
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 6.9e-35 152.9 238 35.3
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 9.1e-35 152.5 210 39.0
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 1.2e-34 152.1 226 38.9
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 1.5e-34 151.8 204 41.2
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 2.0e-34 151.4 206 37.9
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 4.5e-34 150.2 211 40.3
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 5.9e-34 149.8 210 38.6
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 5.9e-34 149.8 202 41.1
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 7.7e-34 149.4 207 39.6
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 7.7e-34 149.4 210 38.1
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.3e-33 148.7 210 38.1
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 1.3e-33 148.7 209 38.3
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 1.3e-33 148.7 214 36.4
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 1.3e-33 148.7 241 33.6
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 2.2e-33 147.9 210 38.1
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 2.2e-33 147.9 213 38.5
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 3.8e-33 147.1 224 38.8
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 3.8e-33 147.1 202 39.6
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 6.5e-33 146.4 202 39.6
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 6.5e-33 146.4 195 39.5
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 1.1e-32 145.6 208 39.9
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 5.5e-32 143.3 205 39.0
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 5.5e-32 143.3 213 38.0
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 7.2e-32 142.9 199 39.2
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 3.6e-31 140.6 206 39.3
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 7.9e-31 139.4 211 37.4
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 1.4e-30 138.7 198 37.4
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 3.0e-30 137.5 164 40.2
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 3.9e-30 137.1 220 35.0
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 5.7e-29 133.3 253 32.4
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 2.2e-28 131.3 201 39.3
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 8.2e-28 129.4 203 38.4
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 1.1e-27 129.0 193 37.3
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 5.9e-26 123.2 182 37.9
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.7e-25 121.7 205 38.0
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.9e-25 120.9 205 37.6
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 4.4e-21 107.1 200 34.0
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 2.2e-20 104.8 137 40.9
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 2.9e-17 94.4 146 34.9
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 4.4e-13 80.5 110 40.0
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.7e-12 78.6 110 37.3
Nitab4.5_0006055g0020 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.6e-10 72.0 208 31.2
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 4.5e-10 70.5 110 37.3
CAN.G334.7 Capsicum annuum HOM05D000075 ORTHO05D000073 5.0e-09 67.0 209 30.1
Sopen09g006450 Solanum pennellii HOM05D000075 ORTHO05D000073 6.5e-09 66.6 206 29.6
PGSC0003DMG400002172 Solanum tuberosum HOM05D000075 ORTHO05D000073 8.5e-09 66.2 206 28.6
Solyc09g011630.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 1.9e-08 65.1 159 31.4
Solyc09g011640.5.1 Solanum lycopersicum HOM05D000075 ORTHO05D000073 2.5e-08 64.7 207 29.5
Nitab4.5_0000008g0190 Nicotiana tabacum HOM05D000075 ORTHO05D000073 3.2e-08 64.3 199 28.1
Sopen09g006280 Solanum pennellii HOM05D000075 ORTHO05D000073 3.2e-08 64.3 188 31.4
PGSC0003DMG400002171 Solanum tuberosum HOM05D000075 ORTHO05D000073 3.2e-08 64.3 159 30.8
Nitab4.5_0008696g0020 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.2e-08 63.9 160 29.4
SEGI_37803 Sequoiadendron giganteum HOM05D000075 ORTHO05D000073 7.2e-08 63.2 194 29.4
Sopen09g006350 Solanum pennellii HOM05D000075 ORTHO05D000073 9.5e-08 62.8 177 29.9
Nitab4.5_0000008g0150 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.6e-07 62.0 162 30.9
Nitab4.5_0012932g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.6e-07 62.0 162 31.5
Nitab4.5_0000008g0070 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.1e-07 61.6 162 30.2
Peaxi162Scf00109g00019 Petunia axillaris HOM05D000075 ORTHO05D000073 2.1e-07 61.6 167 32.3
Peaxi162Scf00109g00024 Petunia axillaris HOM05D000075 ORTHO05D000073 2.1e-07 61.6 177 31.6
Peaxi162Scf00109g00029 Petunia axillaris HOM05D000075 ORTHO05D000073 2.1e-07 61.6 167 32.3
Sopen09g006370 Solanum pennellii HOM05D000075 ORTHO05D000073 2.1e-07 61.6 181 30.4
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.7e-07 61.2 66 40.9
Nitab4.5_0000652g0050 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.7e-07 61.2 234 26.9
Nitab4.5_0006055g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 3.6e-07 60.8 162 30.9
PGSC0003DMG400002170 Solanum tuberosum HOM05D000075 ORTHO05D000073 3.6e-07 60.8 190 26.8
Nitab4.5_0000008g0130 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.7e-07 60.5 184 28.3
Sopen09g006250 Solanum pennellii HOM05D000075 ORTHO05D000073 4.7e-07 60.5 183 29.5
Sopen09g006400 Solanum pennellii HOM05D000075 ORTHO05D000073 6.1e-07 60.1 181 29.8
PGSC0003DMG400002166 Solanum tuberosum HOM05D000075 ORTHO05D000073 6.1e-07 60.1 181 29.3
PGSC0003DMG400002168 Solanum tuberosum HOM05D000075 ORTHO05D000073 6.1e-07 60.1 184 29.3
Nitab4.5_0000008g0180 Nicotiana tabacum HOM05D000075 ORTHO05D000073 8.0e-07 59.7 184 28.8
Sopen09g006340 Solanum pennellii HOM05D000075 ORTHO05D000073 8.0e-07 59.7 181 29.8
Nitab4.5_0000008g0170 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.0e-06 59.3 159 32.1
Sc24g0002270 Simmondsia chinensis HOM05D000075 ORTHO05D000073 1.0e-06 59.3 183 29.5
Solyc09g011600.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 1.0e-06 59.3 181 29.8
AagrBONN_evm.TU.Sc2ySwM_344.4887 Anthoceros agrestis HOM05D000075 ORTHO05D000073 1.4e-06 58.9 214 27.6
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.8e-06 58.5 83 38.6
Solyc09g011500.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 1.8e-06 58.5 183 29.5
CAN.G608.39 Capsicum annuum HOM05D000075 ORTHO05D000073 2.3e-06 58.2 184 28.8
Sopen09g006320 Solanum pennellii HOM05D000075 ORTHO05D000073 2.3e-06 58.2 180 30.0
CBR_g52001 Chara braunii HOM05D000075 ORTHO05D000264 3.0e-06 57.8 203 25.6
AUR62025473 Chenopodium quinoa HOM05D000075 ORTHO05D000073 3.0e-06 57.8 236 27.1
Manes.09G098800 Manihot esculenta HOM05D000075 ORTHO05D000073 3.0e-06 57.8 159 30.8
Nitab4.5_0008292g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 3.0e-06 57.8 184 27.2
SalBow4G2781 Salvia bowleyana HOM05D000075 ORTHO05D000073 3.0e-06 57.8 186 28.5
Nitab4.5_0008696g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.0e-06 57.4 198 24.7
Peaxi162Scf00132g00912 Petunia axillaris HOM05D000075 ORTHO05D000073 4.0e-06 57.4 173 27.2
Lj1g0024920 Lotus japonicus HOM05D000075 ORTHO05D000073 6.8e-06 56.6 172 30.2
Medtr7g065700 Medicago truncatula HOM05D000075 ORTHO05D000073 6.8e-06 56.6 184 29.3
PGSC0003DMG400002174 Solanum tuberosum HOM05D000075 ORTHO05D000073 6.8e-06 56.6 181 29.3
CARHR063000 Cardamine hirsuta HOM05D000075 ORTHO05D000073 8.8e-06 56.2 187 26.7
Thecc.04G216300 Theobroma cacao HOM05D000075 ORTHO05D000073 8.8e-06 56.2 163 31.9


User provided reference genes

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