Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 2.6e-223 778.5 407 100.0
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 5.8e-26 122.9 213 38.5
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 7.6e-26 122.5 375 31.2
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.7e-25 121.3 310 32.6
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.7e-25 121.3 240 37.5
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 2.2e-25 120.9 215 40.5
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.9e-25 120.6 221 39.4
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 6.4e-25 119.4 219 37.9
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.1e-24 118.6 217 36.4
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 1.1e-24 118.6 334 33.2
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.9e-24 117.9 240 37.5
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.4e-24 117.5 219 37.9
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 2.4e-24 117.5 213 37.1
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 5.4e-24 116.3 220 38.2
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.4e-24 116.3 217 40.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 7.1e-24 115.9 220 37.7
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 9.3e-24 115.5 222 39.2
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 1.6e-23 114.8 217 39.2
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.6e-23 114.8 213 37.6
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.1e-23 114.4 220 36.8
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.1e-23 114.4 252 34.5
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 2.7e-23 114.0 216 37.0
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 3.5e-23 113.6 219 35.6
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 4.6e-23 113.2 186 43.5
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 4.6e-23 113.2 216 39.4
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 4.6e-23 113.2 285 34.4
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 6.0e-23 112.8 211 39.3
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 6.0e-23 112.8 229 37.6
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 6.0e-23 112.8 370 33.5
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 7.9e-23 112.5 217 37.8
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 7.9e-23 112.5 217 37.8
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 7.9e-23 112.5 217 37.8
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.0e-22 112.1 219 35.6
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.0e-22 112.1 219 35.6
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.0e-22 112.1 286 31.8
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.3e-22 111.7 218 37.6
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.8e-22 111.3 218 37.2
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.8e-22 111.3 207 39.1
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.8e-22 111.3 210 36.7
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 2.3e-22 110.9 218 38.1
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 3.0e-22 110.5 316 32.3
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 3.0e-22 110.5 362 30.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.0e-22 110.5 207 37.2
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 3.0e-22 110.5 223 36.3
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.9e-22 110.2 318 29.6
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 5.1e-22 109.8 213 37.1
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 6.7e-22 109.4 207 36.7
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 6.7e-22 109.4 207 36.7
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 8.7e-22 109.0 189 38.1
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 8.7e-22 109.0 218 35.8
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 8.7e-22 109.0 219 37.0
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.1e-21 108.6 219 36.1
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.5e-21 108.2 244 36.1
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.5e-21 108.2 393 28.0
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.5e-21 108.2 378 30.4
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.5e-21 108.2 216 36.1
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 1.9e-21 107.8 214 36.9
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.9e-21 107.8 239 34.3
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.9e-21 107.8 368 30.2
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.9e-21 107.8 374 29.4
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.9e-21 107.8 228 36.8
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.5e-21 107.5 319 29.8
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 2.5e-21 107.5 240 35.0
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.5e-21 107.5 225 36.0
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 3.3e-21 107.1 219 33.3
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 4.3e-21 106.7 213 37.6
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 4.3e-21 106.7 399 30.8
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.6e-21 106.3 319 30.1
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 7.4e-21 105.9 292 29.8
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 9.6e-21 105.5 211 35.5
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.3e-20 105.1 243 32.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.3e-20 105.1 229 35.8
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.6e-20 104.8 346 28.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.6e-20 104.8 189 39.7
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.1e-20 104.4 191 37.7
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.1e-20 104.4 209 35.9
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 2.8e-20 104.0 216 34.3
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 8.1e-20 102.4 217 35.0
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 8.1e-20 102.4 214 36.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 2.4e-19 100.9 236 33.9
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.1e-19 100.5 214 34.6
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.0e-19 100.1 374 28.6
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 5.3e-19 99.8 221 35.3
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 5.3e-19 99.8 299 31.4
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 9.0e-19 99.0 220 34.5
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 9.0e-19 99.0 220 34.5
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 9.0e-19 99.0 200 38.0
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 9.0e-19 99.0 387 26.6
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 9.0e-19 99.0 393 28.2
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.2e-18 98.6 356 28.1
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.5e-18 98.2 377 31.6
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.6e-18 97.4 259 33.2
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.4e-18 97.1 238 34.0
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 5.8e-18 96.3 215 34.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-17 95.5 216 34.7
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 1.0e-17 95.5 216 34.7
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.0e-17 95.5 167 37.7
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 2.9e-17 94.0 209 34.0
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 4.9e-17 93.2 319 27.9
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 6.5e-17 92.8 383 28.5
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 6.5e-17 92.8 209 34.0
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 2.5e-16 90.9 383 29.2
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 4.2e-16 90.1 218 29.4
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 2.1e-15 87.8 295 31.5
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.1e-15 87.8 206 29.6
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 7.9e-15 85.9 220 32.7
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.0e-14 84.0 215 31.6
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 6.7e-14 82.8 173 37.0
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 8.7e-14 82.4 231 29.9
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 5.7e-13 79.7 252 28.2
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 9.6e-13 79.0 396 26.3
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.6e-12 78.2 130 42.3
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.6e-12 78.2 240 31.7
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 2.4e-11 74.3 126 42.1
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.5e-10 71.6 305 26.6
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 4.5e-10 70.1 154 33.8
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 1.7e-09 68.2 194 30.4
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.5e-08 64.3 171 33.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 3.2e-08 63.9 121 38.0
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 4.2e-08 63.5 87 43.7
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 7.1e-08 62.8 107 39.3
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.1e-07 61.2 64 50.0
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 2.1e-07 61.2 114 34.2
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.7e-07 60.8 241 29.0
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.3e-06 58.5 362 24.9
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 3.9e-06 57.0 261 25.7
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 5.1e-06 56.6 100 42.0
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 5.1e-06 56.6 100 35.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.1e-06 56.6 122 32.8
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 5.1e-06 56.6 101 37.6
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 6.7e-06 56.2 126 31.7
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 6.7e-06 56.2 126 31.7


User provided reference genes

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