Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 0.0e+00 1158.3 584 100.0
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 6.2e-138 495.4 611 47.3
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 9.9e-136 488.0 618 45.5
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.3e-135 487.6 561 48.7
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 3.9e-132 476.1 581 48.0
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 3.9e-132 476.1 561 48.1
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.5e-131 474.2 585 46.8
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.9e-131 473.8 579 47.0
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.6e-130 470.7 564 46.5
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 3.6e-130 469.5 575 46.6
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 3.1e-129 466.5 576 45.8
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 3.1e-129 466.5 561 46.9
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.0e-128 463.8 561 46.3
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.0e-128 463.8 588 46.4
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 2.6e-128 463.4 560 45.4
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.4e-128 463.0 559 46.7
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.4e-128 462.6 563 47.2
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 4.4e-128 462.6 585 46.2
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 4.4e-128 462.6 561 45.8
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 7.6e-128 461.8 563 47.2
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 9.9e-128 461.5 564 45.7
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 2.9e-127 459.9 562 46.3
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 2.9e-127 459.9 560 45.0
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 6.4e-127 458.8 565 46.2
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.1e-126 458.0 563 46.2
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 1.9e-126 457.2 594 44.3
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 3.2e-126 456.4 580 46.2
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 4.2e-126 456.1 578 45.3
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 4.2e-126 456.1 581 45.3
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 7.1e-126 455.3 563 46.7
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 7.1e-126 455.3 583 46.7
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 9.3e-126 454.9 579 46.1
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 9.3e-126 454.9 588 45.7
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.6e-125 454.1 578 45.2
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.6e-125 454.1 563 46.2
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 2.7e-125 453.4 571 46.8
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 2.7e-125 453.4 566 45.1
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 3.5e-125 453.0 559 45.8
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 4.6e-125 452.6 571 46.6
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 4.6e-125 452.6 563 45.8
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 4.6e-125 452.6 611 44.8
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 7.9e-125 451.8 558 45.7
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 7.9e-125 451.8 573 44.7
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.7e-124 450.7 561 45.6
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 3.9e-124 449.5 587 45.7
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.1e-124 449.1 561 45.6
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 5.1e-124 449.1 584 46.6
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 6.6e-124 448.7 567 45.0
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.1e-123 448.0 581 46.5
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.9e-123 447.2 580 45.3
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 2.5e-123 446.8 578 45.8
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.5e-123 446.8 574 45.3
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 2.5e-123 446.8 586 44.9
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.3e-123 446.4 588 45.6
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 3.3e-123 446.4 563 44.2
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 4.3e-123 446.0 561 45.5
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 7.3e-123 445.3 579 44.0
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 9.6e-123 444.9 593 44.2
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 9.6e-123 444.9 578 43.8
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 9.6e-123 444.9 562 46.8
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.3e-122 444.5 560 45.4
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 2.8e-122 443.4 561 45.8
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 4.8e-122 442.6 561 45.5
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 4.8e-122 442.6 575 44.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 6.2e-122 442.2 563 44.9
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.4e-121 441.0 587 44.8
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 1.8e-121 440.7 608 43.3
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 3.1e-121 439.9 580 45.2
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 3.1e-121 439.9 584 45.7
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 2.0e-120 437.2 593 44.4
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 4.5e-120 436.0 582 45.0
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.3e-119 434.5 593 43.8
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 4.9e-119 432.6 552 45.7
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 2.4e-118 430.3 603 44.1
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 7.1e-118 428.7 592 43.1
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 9.3e-118 428.3 576 44.8
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 9.3e-118 428.3 590 44.2
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.2e-117 427.9 582 45.4
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 6.0e-117 425.6 615 42.6
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 1.0e-116 424.9 574 44.1
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 6.7e-116 422.2 650 40.8
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 8.1e-114 415.2 560 42.7
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 1.8e-113 414.1 644 41.0
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 1.2e-112 411.4 585 43.1
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 1.1e-110 404.8 663 39.4
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.4e-110 404.4 649 39.1
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 3.2e-110 403.3 613 43.2
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 4.2e-110 402.9 553 41.2
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.5e-109 399.8 561 42.2
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 7.9e-109 398.7 498 46.0
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 2.3e-108 397.1 611 39.8
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 3.0e-108 396.7 481 47.4
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.8e-105 387.5 537 43.2
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.3e-105 386.0 481 47.6
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 2.0e-104 384.0 553 41.8
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.9e-102 377.5 502 45.2
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 6.7e-100 369.0 614 39.9
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.4e-97 361.3 556 39.6
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.1e-97 360.1 561 39.8
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 7.9e-93 345.5 575 39.8
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 4.3e-91 339.7 429 45.0
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 4.5e-88 329.7 411 47.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.2e-87 327.4 543 39.6
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.2e-59 235.3 528 33.3
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 4.5e-56 223.4 290 43.4
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.9e-50 203.4 242 50.4
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 9.5e-46 189.1 240 42.5
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 2.3e-44 184.5 221 45.7
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.2e-43 182.2 326 38.3
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 4.6e-40 170.2 633 28.9
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 2.1e-32 144.8 223 38.1
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.6e-29 135.2 162 48.1
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 4.1e-25 120.6 114 57.0
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 3.5e-24 117.5 270 31.9
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.1e-22 112.5 307 28.3
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 2.5e-22 111.3 164 42.7
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 2.5e-22 111.3 124 50.8
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 3.6e-21 107.5 152 36.8
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 2.1e-13 81.6 122 39.3
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 4.0e-12 77.4 81 42.0
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.9e-10 71.2 72 43.1
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 9.3e-09 66.2 49 51.0
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.3e-06 57.4 55 50.9


User provided reference genes

Program Settings