Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_11340 Physcomitrium patens HOM05D014505 ORTHO05D030131 3.3e-101 371.7 184 100.0
Pp3c6_3830 Physcomitrium patens HOM05D011764 ORTHO05D030131 3.7e-36 155.6 177 53.1
Pp3c16_19790 Physcomitrium patens HOM05D014505 ORTHO05D000300 4.1e-19 99.0 197 36.0
Pp3c25_11360 Physcomitrium patens HOM05D014505 ORTHO05D030131 2.6e-18 96.3 139 44.6
Pp3c25_11290 Physcomitrium patens HOM05D011764 ORTHO05D017075 3.2e-16 89.4 209 35.4
Pp3c6_3870 Physcomitrium patens HOM05D015359 ORTHO05D017075 3.9e-14 82.4 67 61.2
Pp3c5_25070 Physcomitrium patens HOM05D015359 ORTHO05D017075 2.6e-13 79.7 67 56.7
Pp3c3_17970 Physcomitrium patens HOM05D015359 ORTHO05D017075 1.1e-11 74.3 163 35.0
Pp3c11_9210 Physcomitrium patens HOM05D011764 ORTHO05D026047 4.1e-11 72.4 99 38.4
Pp3c25_11400 Physcomitrium patens HOM05D015359 ORTHO05D017075 4.1e-11 72.4 112 44.6
Pp3c6_5150 Physcomitrium patens HOM05D011764 ORTHO05D026047 9.1e-11 71.2 99 37.4
Pp3c3_6760 Physcomitrium patens HOM05D014505 ORTHO05D026046 3.5e-10 69.3 204 29.4
Pp3c25_11210 Physcomitrium patens HOM05D011764 ORTHO05D026047 7.7e-10 68.2 149 31.5
Pp3c6_5260 Physcomitrium patens HOM05D011764 ORTHO05D017075 7.7e-10 68.2 123 35.0
Pp3c13_3350 Physcomitrium patens HOM05D014505 ORTHO05D026046 1.3e-09 67.4 142 31.7
Pp3c6_12850 Physcomitrium patens HOM05D015359 ORTHO05D050340 8.5e-09 64.7 149 33.6
Pp3c22_16710 Physcomitrium patens HOM05D011764 ORTHO05D308383 1.1e-08 64.3 97 42.3
Pp3c3_6890 Physcomitrium patens HOM05D014505 ORTHO05D026046 1.5e-08 63.9 128 30.5
Pp3c3_6780 Physcomitrium patens HOM05D014505 ORTHO05D026046 1.9e-08 63.5 128 30.5
Mapoly0023s0034 Marchantia polymorpha HOM05D000262 ORTHO05D000399 3.2e-08 62.8 98 37.8
Pp3c20_18320 Physcomitrium patens HOM05D011764 ORTHO05D308574 5.5e-08 62.0 79 44.3
Pp3c5_14790 Physcomitrium patens HOM05D014505 ORTHO05D050340 5.5e-08 62.0 175 30.3
Pp3c24_5200 Physcomitrium patens HOM05D011764 ORTHO05D318183 7.2e-08 61.6 108 37.0
Pp3c5_25180 Physcomitrium patens HOM05D011764 ORTHO05D026047 1.2e-07 60.8 228 28.5
Sed0000143 Sechium edule HOM05D000262 ORTHO05D000300 1.2e-07 60.8 139 29.5
Os01g0309800 Oryza sativa ssp. japonica HOM05D006893 ORTHO05D008495 1.6e-07 60.5 72 43.1
Pp3c19_4310 Physcomitrium patens HOM05D000262 ORTHO05D000300 2.7e-07 59.7 69 44.9
Pp3c19_4313 Physcomitrium patens HOM05D000262 ORTHO05D000300 2.7e-07 59.7 69 44.9
Prupe.7G025000 Prunus persica HOM05D000262 ORTHO05D000300 2.7e-07 59.7 138 29.7
Medtr8g091420 Medicago truncatula HOM05D000262 ORTHO05D000300 4.7e-07 58.9 63 50.8
vmacro21225 Vaccinium macrocarpon HOM05D000262 ORTHO05D000300 4.7e-07 58.9 78 41.0
MD15G1023400 Malus domestica HOM05D004004 ORTHO05D003284 6.1e-07 58.5 60 43.3
CiPaw.09G052700 Carya illinoinensis HOM05D000262 ORTHO05D000300 8.0e-07 58.2 151 29.1
Pp3c21_15220 Physcomitrium patens HOM05D000262 ORTHO05D316196 8.0e-07 58.2 60 46.7
Pp3c18_2310 Physcomitrium patens HOM05D014505 ORTHO05D013334 1.0e-06 57.8 141 30.5
THA.LOC104803242 Tarenaya hassleriana HOM05D000262 ORTHO05D000300 1.0e-06 57.8 75 40.0
Thecc.01G107400 Theobroma cacao HOM05D000262 ORTHO05D000300 1.0e-06 57.8 78 42.3
Aqoxy6G00547 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 1.4e-06 57.4 80 38.8
MSTRG.24881 Avicennia marina HOM05D000262 ORTHO05D005718 1.4e-06 57.4 101 40.6
Duzib264G0478 Durio zibethinus HOM05D000262 ORTHO05D000300 1.4e-06 57.4 78 41.0
TWI31G1118 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 1.4e-06 57.4 78 39.7
TWI79G1519 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 1.4e-06 57.4 138 30.4
Aqoxy5G04359 Aquilegia oxysepala HOM05D000262 ORTHO05D005718 1.8e-06 57.0 86 40.7
PSO063G5114 Papaver somniferum HOM05D000262 ORTHO05D005718 1.8e-06 57.0 63 44.4
Pp3c19_4360 Physcomitrium patens HOM05D020085 ORTHO05D000300 1.8e-06 57.0 62 43.5
Prupe.1G375500 Prunus persica HOM05D004004 ORTHO05D003284 1.8e-06 57.0 60 40.0
Gohir.A02G132800 Gossypium hirsutum HOM05D000262 ORTHO05D000300 2.3e-06 56.6 78 42.3
Gohir.D03G044200 Gossypium hirsutum HOM05D000262 ORTHO05D000300 2.3e-06 56.6 78 42.3
Gorai.003G045300 Gossypium raimondii HOM05D000262 ORTHO05D000300 2.3e-06 56.6 78 42.3
MD03G1023000 Malus domestica HOM05D000262 ORTHO05D000300 2.3e-06 56.6 70 41.4
Pp3c6_4360 Physcomitrium patens HOM05D016040 ORTHO05D005718 2.3e-06 56.6 69 50.7
Zm00001eb001530 Zea mays HOM05D000262 ORTHO05D005718 2.3e-06 56.6 78 42.3
Zm00001eb130400 Zea mays HOM05D006893 ORTHO05D008495 2.3e-06 56.6 72 37.5
CiPaw.10G044300 Carya illinoinensis HOM05D000262 ORTHO05D000300 3.0e-06 56.2 147 28.6
Duzib147G0541 Durio zibethinus HOM05D000262 ORTHO05D000300 3.0e-06 56.2 78 41.0
PSO500G0008 Papaver somniferum HOM05D000262 ORTHO05D000300 3.0e-06 56.2 62 46.8
PSO675G2640 Papaver somniferum HOM05D000262 ORTHO05D000300 3.0e-06 56.2 62 46.8
Psat7g053160 Pisum sativum HOM05D000262 ORTHO05D000300 3.0e-06 56.2 63 47.6
CiPaw.08G059800 Carya illinoinensis HOM05D004004 ORTHO05D003284 4.0e-06 55.8 60 40.0
Dinv16318 Davidia involucrata HOM05D000262 ORTHO05D000300 4.0e-06 55.8 76 39.5
MBI04_g07881_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D005718 4.0e-06 55.8 112 35.7
MD08G1026800 Malus domestica HOM05D004004 ORTHO05D003284 4.0e-06 55.8 60 40.0
Pp3c21_6960 Physcomitrium patens HOM05D020085 ORTHO05D311222 4.0e-06 55.8 62 40.3
Pp3c6_1500 Physcomitrium patens HOM05D015359 ORTHO05D017075 4.0e-06 55.8 96 42.7
PGR142G1407 Punica granatum HOM05D000262 ORTHO05D000300 4.0e-06 55.8 138 29.7
QL07p015611 Quercus lobata HOM05D000262 ORTHO05D000300 4.0e-06 55.8 138 29.0
COL.COLO4_11052 Corchorus olitorius HOM05D000262 ORTHO05D000300 5.2e-06 55.5 78 39.7
ECA246G3260 Erigeron canadensis HOM05D000262 ORTHO05D005718 5.2e-06 55.5 101 37.6
FAN26G0693 Fragaria x ananassa HOM05D000262 ORTHO05D000300 5.2e-06 55.5 78 39.7
Mapoly0040s0108 Marchantia polymorpha HOM05D033683 ORTHO05D030131 5.2e-06 55.5 77 41.6
Pp3c22_7540 Physcomitrium patens HOM05D010122 ORTHO05D000300 5.2e-06 55.5 74 39.2
QL06p050470 Quercus lobata HOM05D000262 ORTHO05D000300 5.2e-06 55.5 77 41.6
Sed0001286 Sechium edule HOM05D000262 ORTHO05D000300 5.2e-06 55.5 138 28.3
MSTRG.3881 Avicennia marina HOM05D006893 ORTHO05D008495 6.7e-06 55.1 106 28.3
CiPaw.09G069400 Carya illinoinensis HOM05D000262 ORTHO05D000300 6.7e-06 55.1 69 42.0
Hma1.2p1_0775F.1_g216490 Hydrangea macrophylla HOM05D004004 ORTHO05D003284 6.7e-06 55.1 66 39.4
Lj4g0003851 Lotus japonicus HOM05D000262 ORTHO05D000300 6.7e-06 55.1 63 46.0
Lalb_Chr12g0203661 Lupinus albus HOM05D000262 ORTHO05D000300 6.7e-06 55.1 61 47.5
Os03g0120400 Oryza sativa ssp. japonica HOM05D000262 ORTHO05D005718 6.7e-06 55.1 123 35.0
Peaxi162Scf00117g00211 Petunia axillaris HOM05D000262 ORTHO05D005718 6.7e-06 55.1 94 37.2
PGR042G0567 Punica granatum HOM05D000262 ORTHO05D000300 6.7e-06 55.1 67 41.8
SEGI_32886 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 6.7e-06 55.1 77 40.3
SEGI_41476 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 6.7e-06 55.1 74 40.5
Actinidia37845 Actinidia chinensis HOM05D000262 ORTHO05D000300 8.8e-06 54.7 80 38.8
ATR0579G030 Amborella trichopoda HOM05D000262 ORTHO05D005718 8.8e-06 54.7 70 42.9
Glyma.05G181500 Glycine max HOM05D000262 ORTHO05D000300 8.8e-06 54.7 63 46.0
Glyma.08G139200 Glycine max HOM05D000262 ORTHO05D000300 8.8e-06 54.7 63 46.0
Glyma.18G019300 Glycine max HOM05D000262 ORTHO05D000300 8.8e-06 54.7 63 46.0
HanXRQChr14g0462111 Helianthus annuus HOM05D000262 ORTHO05D005718 8.8e-06 54.7 91 39.6
Lalb_Chr07g0184961 Lupinus albus HOM05D000262 ORTHO05D000300 8.8e-06 54.7 73 41.1
Mapoly0168s0010 Marchantia polymorpha HOM05D015359 ORTHO05D000300 8.8e-06 54.7 64 43.8
Sc03g0002300 Simmondsia chinensis HOM05D000262 ORTHO05D000300 8.8e-06 54.7 78 42.3
Thecc.05G198300 Theobroma cacao HOM05D000262 ORTHO05D000300 8.8e-06 54.7 80 33.8
TPR.G28543 Trifolium pratense HOM05D000262 ORTHO05D000300 8.8e-06 54.7 64 45.3


User provided reference genes

Program Settings