Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 7.1e-113 410.6 206 100.0
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 4.7e-56 221.9 196 59.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.0e-51 206.5 194 54.1
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.6e-51 206.1 204 54.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.7e-50 203.4 195 55.4
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.2e-50 203.0 199 52.3
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.2e-50 203.0 193 53.9
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.2e-50 203.0 195 55.4
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 6.5e-50 201.4 196 54.6
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.1e-49 200.7 178 59.0
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.1e-49 200.7 208 51.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.5e-49 200.3 196 54.1
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.9e-49 199.9 193 54.4
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.9e-49 199.9 179 58.1
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 2.5e-49 199.5 188 55.9
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 3.2e-49 199.1 190 54.7
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 5.5e-49 198.4 181 57.5
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 7.2e-49 198.0 175 57.7
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 7.2e-49 198.0 207 53.1
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 9.4e-49 197.6 185 56.2
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 9.4e-49 197.6 189 54.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 9.4e-49 197.6 196 51.0
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.2e-48 197.2 179 57.5
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.2e-48 197.2 187 55.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.6e-48 196.8 187 54.0
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-48 196.8 187 54.5
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-48 196.8 187 54.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-48 196.8 187 55.1
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.7e-48 196.1 187 54.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.6e-48 195.7 175 57.1
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.6e-48 195.7 175 57.1
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.6e-48 195.7 193 54.9
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 4.7e-48 195.3 194 53.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.7e-48 195.3 178 56.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 4.7e-48 195.3 207 52.7
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 4.7e-48 195.3 173 56.1
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 6.1e-48 194.9 200 53.5
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.1e-48 194.9 184 53.8
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.0e-48 194.5 182 53.8
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.0e-47 194.1 169 58.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.0e-47 194.1 185 53.5
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.4e-47 193.7 191 52.9
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.4e-47 193.7 194 53.1
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.8e-47 193.4 194 52.6
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.8e-47 193.4 177 56.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.8e-47 193.4 177 56.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.8e-47 193.4 180 55.0
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.8e-47 193.4 191 52.4
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.8e-47 193.4 204 51.5
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.3e-47 193.0 180 54.4
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.3e-47 193.0 203 50.7
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.3e-47 193.0 170 55.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.3e-47 193.0 185 51.9
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.0e-47 192.6 188 54.8
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.0e-47 192.2 192 52.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.0e-47 192.2 189 52.4
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.0e-47 192.2 195 53.3
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 4.0e-47 192.2 188 51.1
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.0e-47 192.2 180 54.4
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 4.0e-47 192.2 167 56.3
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 4.0e-47 192.2 186 52.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 5.2e-47 191.8 169 58.0
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 5.2e-47 191.8 151 62.3
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 5.2e-47 191.8 199 50.3
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 6.7e-47 191.4 181 55.8
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.7e-47 191.4 182 53.3
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 6.7e-47 191.4 182 53.3
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 8.8e-47 191.0 178 56.2
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 8.8e-47 191.0 183 54.6
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 8.8e-47 191.0 188 53.2
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 8.8e-47 191.0 167 55.7
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 8.8e-47 191.0 210 49.5
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 8.8e-47 191.0 180 54.4
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.2e-46 190.7 195 52.8
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.5e-46 190.3 186 50.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.5e-46 190.3 177 56.5
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.5e-46 190.3 198 52.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.0e-46 189.9 192 50.0
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.0e-46 189.9 202 51.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.0e-46 189.9 199 50.3
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.6e-46 189.5 181 55.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.6e-46 189.5 204 52.0
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 3.3e-46 189.1 177 54.2
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.4e-46 188.7 195 52.8
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.4e-46 188.7 175 52.6
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.4e-46 188.7 175 52.6
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 5.7e-46 188.3 193 50.3
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.7e-46 188.3 197 50.3
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.7e-46 188.3 186 54.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 7.5e-46 188.0 192 53.6
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.5e-46 188.0 177 52.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 7.5e-46 188.0 195 50.3
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 9.7e-46 187.6 186 54.3
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 9.7e-46 187.6 198 51.0
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.3e-45 187.2 210 49.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.7e-45 186.8 183 51.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.2e-45 186.4 163 58.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 2.2e-45 186.4 186 52.2
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 8.2e-45 184.5 162 54.9
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.1e-44 184.1 172 55.2
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.4e-44 183.7 197 47.7
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.4e-44 183.7 194 49.5
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.8e-44 183.3 194 51.5
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.8e-44 183.3 187 50.3
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.1e-44 182.2 142 61.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.1e-44 182.2 177 53.1
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.1e-44 182.2 149 59.1
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.3e-44 181.8 148 60.1
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.0e-44 181.4 186 52.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 9.1e-44 181.0 167 55.1
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.6e-43 180.3 173 52.0
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.7e-43 179.5 201 48.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.7e-43 179.5 186 48.9
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 3.5e-43 179.1 202 48.5
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.5e-43 178.7 179 50.8
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.0e-42 177.6 200 47.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.9e-42 176.0 198 47.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.0e-42 175.3 182 48.9
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.2e-41 172.6 170 52.4
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.4e-39 167.2 195 47.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.4e-39 167.2 192 46.9
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.4e-39 167.2 279 38.7
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.8e-39 166.8 184 50.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-38 163.7 155 52.9
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.7e-38 161.8 176 50.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.1e-36 157.5 127 63.0
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.4e-36 157.1 154 51.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.5e-35 152.1 149 52.3
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 2.3e-34 149.8 113 61.1
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.5e-33 147.1 159 45.9
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-32 144.1 132 55.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.8e-32 142.9 119 62.2
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.0e-31 139.4 107 64.5
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.6e-30 136.3 110 59.1
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 5.7e-30 135.2 104 61.5
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.3e-29 131.3 194 41.8
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.6e-27 127.1 166 44.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-26 124.0 153 47.1
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.1e-24 116.7 88 62.5
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 8.0e-24 114.8 94 57.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.6e-19 100.5 196 33.7
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.6e-19 100.5 169 39.6
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.0e-19 100.1 196 31.6
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 9.5e-17 91.3 123 41.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.9e-12 77.0 134 34.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 3.9e-10 69.3 73 47.9
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 6.6e-10 68.6 73 46.6
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 4.3e-09 65.9 47 61.7
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 7.3e-09 65.1 54 59.3
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.2e-08 64.3 48 52.1
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.1e-08 63.5 52 55.8
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 2.8e-08 63.2 81 39.5


User provided reference genes

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