Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 0.0e+00 1283.5 715 100.0
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 3.5e-268 928.3 680 74.6
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.9e-237 826.2 656 71.5
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 9.6e-234 813.9 690 67.4
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.9e-218 763.1 657 65.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 5.9e-215 751.5 660 63.6
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.7e-214 750.0 652 66.3
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 8.5e-214 747.7 651 65.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.4e-213 746.9 660 65.2
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 7.2e-213 744.6 681 64.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 9.4e-213 744.2 652 63.5
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.4e-213 744.2 660 65.0
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.7e-212 742.7 667 62.2
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.6e-212 741.9 672 62.1
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 4.6e-212 741.9 651 65.7
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.8e-211 740.0 653 64.8
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.8e-211 740.0 660 64.2
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 3.9e-211 738.8 651 65.0
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.1e-211 738.4 651 64.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.2e-209 733.0 652 62.4
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 2.2e-209 733.0 653 63.7
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.8e-209 732.6 680 62.1
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.7e-209 732.3 652 62.9
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 6.3e-209 731.5 664 63.4
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 6.3e-209 731.5 649 65.5
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 8.2e-209 731.1 678 62.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 8.2e-209 731.1 652 62.3
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.1e-208 730.7 652 62.1
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.1e-208 730.7 652 62.9
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.4e-208 729.6 651 64.7
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 4.1e-208 728.8 652 65.2
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.2e-207 727.2 651 62.8
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.9e-207 724.9 652 62.0
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 5.9e-207 724.9 651 64.2
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 7.7e-207 724.5 652 64.0
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.7e-206 723.4 673 62.1
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.9e-206 722.6 651 62.4
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.1e-205 720.7 675 60.9
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.1e-205 720.7 660 61.5
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.5e-205 719.5 653 62.3
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.2e-205 719.2 637 63.4
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 5.5e-205 718.4 652 64.1
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 7.2e-205 718.0 653 61.7
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 7.2e-205 718.0 649 63.0
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 2.7e-204 716.1 651 63.1
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 4.7e-204 715.3 654 62.1
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 4.7e-204 715.3 660 60.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 1.4e-203 713.8 648 61.7
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.4e-203 713.8 649 61.5
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.8e-203 713.4 669 62.0
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 1.8e-203 713.4 680 61.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 2.3e-203 713.0 669 60.4
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.9e-203 712.2 652 62.0
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 3.9e-203 712.2 652 61.7
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 5.2e-203 711.8 669 61.9
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 8.8e-203 711.1 652 63.0
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.5e-202 710.3 715 57.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.0e-202 709.9 715 57.8
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.6e-202 709.5 675 61.9
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.3e-202 709.1 637 62.8
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 7.4e-202 708.0 651 62.4
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 7.4e-202 708.0 674 61.7
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 8.2e-201 704.5 651 61.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.1e-200 704.1 640 62.7
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 2.4e-200 703.0 652 60.1
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 5.3e-200 701.8 681 58.6
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 9.1e-200 701.0 652 63.2
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.6e-199 699.5 696 58.5
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 3.5e-199 699.1 696 58.5
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 4.5e-199 698.7 651 62.8
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.9e-198 696.0 650 62.9
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 6.5e-198 694.9 649 61.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 4.2e-197 692.2 654 61.2
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 7.2e-197 691.4 653 61.7
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 7.2e-197 691.4 625 65.0
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 9.4e-197 691.0 651 61.6
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 9.4e-197 691.0 649 61.8
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.1e-196 689.9 651 59.8
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.4e-195 687.2 682 57.8
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 3.0e-195 686.0 651 62.1
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.0e-195 685.6 682 57.6
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.7e-195 684.9 682 59.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.5e-194 683.7 682 58.1
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.4e-194 682.2 651 61.9
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 7.5e-194 681.4 654 59.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.3e-193 680.6 650 60.0
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.8e-193 679.5 652 60.7
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 4.8e-193 678.7 649 61.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 4.8e-193 678.7 649 61.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 4.8e-193 678.7 650 62.0
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 3.1e-192 676.0 653 61.4
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 9.1e-192 674.5 649 60.9
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 4.5e-191 672.2 652 59.5
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 7.7e-191 671.4 650 61.8
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 7.7e-191 671.4 650 61.8
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.2e-190 669.8 652 59.0
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.9e-189 666.8 651 59.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.5e-189 666.4 649 60.4
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.2e-189 666.0 652 59.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.6e-188 663.7 652 59.7
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.6e-188 663.7 616 64.9
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.4e-187 660.6 645 59.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 4.4e-186 655.6 651 59.6
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 9.8e-186 654.4 731 53.9
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.3e-185 654.1 634 58.8
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 1.7e-185 653.7 660 57.4
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 6.3e-185 651.7 680 57.8
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 2.3e-182 643.3 652 59.0
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.5e-181 640.6 651 59.3
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 4.2e-181 639.0 595 63.0
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.8e-179 633.6 719 53.4
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.1e-173 614.4 708 53.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.3e-173 611.7 684 53.5
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.5e-173 611.3 702 53.3
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 2.1e-172 610.1 554 62.1
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.0e-171 606.3 678 53.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 8.0e-164 581.6 1022 40.2
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 5.8e-154 548.9 538 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 3.5e-151 539.7 555 59.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 6.6e-150 535.4 707 49.9
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.1e-124 450.7 429 62.9
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.7e-119 433.7 385 67.3
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.2e-106 391.7 364 59.1
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.0e-105 386.3 355 59.7
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.0e-86 323.9 709 35.1
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.0e-78 298.9 365 52.1
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 4.0e-62 243.8 478 39.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 1.7e-60 238.4 482 38.8
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.2e-60 238.0 258 57.0
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.9e-33 147.5 196 46.9
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.9e-32 145.2 109 66.1
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 5.6e-32 143.7 133 57.1
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.5e-32 142.9 134 57.5
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 4.4e-29 134.0 631 25.7
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.2e-26 125.9 703 22.6
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.2e-26 125.9 140 52.1
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 4.6e-26 124.0 150 52.0
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-24 119.4 92 66.3
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 7.3e-24 116.7 90 70.0
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.4e-14 85.1 694 21.8
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.5e-13 82.4 585 21.2
Pp3c16_23710 Physcomitrium patens HOM05D004837 ORTHO05D311744 3.4e-13 81.3 340 29.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.2e-10 72.8 109 46.8
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.7e-07 61.2 72 51.4
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 3.1e-06 58.2 82 42.7


User provided reference genes

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