Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-215 753.1 381 100.0
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 6.3e-123 444.9 379 61.7
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.6e-118 429.1 384 59.6
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-111 407.5 249 80.3
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.8e-109 397.9 320 62.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 4.8e-99 365.5 345 55.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.5e-97 359.0 321 56.7
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.9e-95 353.6 327 52.9
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.6e-94 350.5 321 53.6
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.1e-94 350.1 314 55.4
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.7e-94 349.7 321 53.6
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.7e-94 349.7 312 54.8
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.7e-94 349.7 328 54.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.7e-94 349.7 328 53.7
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 6.1e-94 348.6 316 55.4
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 6.1e-94 348.6 314 55.1
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 6.1e-94 348.6 314 55.1
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 8.0e-94 348.2 321 53.6
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.0e-93 347.8 323 52.9
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.3e-93 346.7 342 51.5
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.3e-93 346.7 317 53.9
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 3.0e-93 346.3 327 54.1
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 8.8e-93 344.7 334 53.3
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 8.8e-93 344.7 339 53.7
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.5e-92 344.0 321 52.6
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.5e-92 344.0 345 50.1
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.5e-92 344.0 328 52.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 2.6e-92 343.2 322 55.9
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.6e-92 343.2 317 53.3
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.6e-92 343.2 317 53.9
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 2.6e-92 343.2 326 51.8
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 2.6e-92 343.2 322 52.5
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.4e-92 342.8 317 53.6
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 4.4e-92 342.4 321 53.3
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 4.4e-92 342.4 316 54.4
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 5.7e-92 342.0 317 53.3
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 7.5e-92 341.7 327 52.3
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.7e-92 341.3 328 52.4
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 9.7e-92 341.3 320 52.8
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.3e-91 340.9 320 53.4
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-91 340.9 321 53.3
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.2e-91 340.1 322 53.7
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.2e-91 340.1 322 53.7
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.2e-91 340.1 327 51.1
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 3.7e-91 339.3 320 53.8
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 3.7e-91 339.3 317 53.0
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 3.7e-91 339.3 317 53.0
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.7e-91 339.3 316 53.8
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 6.3e-91 338.6 317 53.0
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 8.3e-91 338.2 322 53.1
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-90 337.8 317 53.0
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.1e-90 337.8 306 53.9
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.4e-90 337.4 316 53.8
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.4e-90 337.4 320 52.5
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-90 337.4 316 53.2
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.4e-90 336.7 317 55.2
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.4e-90 336.7 310 54.2
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.4e-90 336.7 328 52.1
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.1e-90 336.3 339 50.4
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 5.3e-90 335.5 326 52.8
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.3e-90 335.5 316 54.7
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 5.3e-90 335.5 328 51.5
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 7.0e-90 335.1 320 51.9
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 9.1e-90 334.7 317 51.7
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.2e-89 334.3 328 51.2
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.2e-89 334.3 316 54.1
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.0e-89 333.6 339 51.3
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.0e-89 333.6 312 53.2
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 2.0e-89 333.6 321 53.0
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.0e-89 333.6 328 49.7
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.5e-89 332.8 328 50.9
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.5e-89 332.8 311 54.3
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 3.5e-89 332.8 317 52.1
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 3.5e-89 332.8 322 51.2
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 3.5e-89 332.8 328 51.5
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.5e-89 332.8 331 53.8
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 5.9e-89 332.0 310 53.9
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 7.7e-89 331.6 328 49.4
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 7.7e-89 331.6 313 53.4
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.0e-88 331.3 328 49.4
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.3e-88 330.9 313 53.4
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 3.8e-88 329.3 313 52.4
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 6.5e-88 328.6 329 49.8
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 8.5e-88 328.2 317 49.8
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 8.5e-88 328.2 328 49.4
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.1e-87 327.8 310 53.5
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.5e-87 327.4 311 53.4
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.5e-87 327.4 317 49.8
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-87 327.4 317 49.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.9e-87 327.0 309 52.4
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.5e-87 326.6 320 51.6
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 2.5e-87 326.6 337 49.6
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 3.2e-87 326.2 313 52.4
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.5e-87 325.5 321 50.5
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.6e-86 323.9 316 51.6
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.7e-86 323.2 321 51.1
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.7e-86 323.2 266 60.9
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.0e-86 321.6 163 96.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.0e-85 321.2 279 55.6
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 3.0e-85 319.7 345 49.3
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.2e-84 317.8 306 52.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 3.4e-84 316.2 298 53.7
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 4.4e-84 315.8 295 54.2
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.5e-81 306.2 318 48.4
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.0e-80 304.7 417 41.5
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.3e-80 303.5 256 56.2
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 2.9e-80 303.1 317 50.5
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.6e-78 297.4 269 54.3
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.8e-78 296.6 269 54.6
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.7e-78 295.8 269 54.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 8.0e-78 295.0 334 45.5
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 3.2e-74 283.1 248 58.1
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 3.5e-73 279.6 261 54.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 5.9e-73 278.9 316 46.2
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.0e-72 278.1 248 54.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 8.6e-72 275.0 322 44.4
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.1e-70 270.4 349 44.1
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.8e-70 270.0 299 48.5
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.1e-69 266.5 269 50.2
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 4.9e-59 232.6 219 51.1
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 8.3e-59 231.9 214 54.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.9e-58 230.7 323 43.3
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 5.6e-55 219.2 210 51.0
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.0e-48 198.4 196 49.0
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 9.6e-47 191.8 184 53.3
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.4e-45 188.0 334 35.3
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 5.2e-45 186.0 172 53.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.7e-43 181.0 232 45.3
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 3.8e-43 179.9 202 47.0
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 2.1e-41 174.1 178 51.7
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.4e-34 150.6 199 42.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 9.3e-34 148.7 309 33.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.6e-33 147.9 337 30.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 8.1e-30 135.6 117 53.0
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.3e-27 128.3 137 52.6
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 9.3e-26 122.1 75 72.0
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.3e-23 113.2 94 54.3
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 5.5e-18 96.3 98 44.9
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 1.6e-17 94.7 184 34.2
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 3.3e-15 87.0 96 47.9
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.9e-11 73.9 77 57.1
AagrBONN_evm.TU.Sc2ySwM_344.171 Anthoceros agrestis HOM05D005356 ORTHO05D074930 2.3e-08 64.3 109 37.6


User provided reference genes

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