Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 0.0e+00 1154.0 587 100.0
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 2.1e-178 629.8 450 70.9
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 3.5e-157 559.3 431 65.7
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.2e-144 517.7 452 60.6
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.7e-143 513.8 452 60.0
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 7.1e-142 508.4 454 59.3
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 4.6e-141 505.8 453 58.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 4.6e-141 505.8 453 58.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.7e-140 503.8 454 58.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.7e-140 503.8 451 59.6
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 2.3e-140 503.4 451 59.4
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 5.1e-140 502.3 452 59.7
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 5.1e-140 502.3 447 59.1
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 5.1e-140 502.3 447 59.1
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.6e-140 501.9 451 59.4
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.1e-139 501.1 456 58.3
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.5e-139 500.7 467 57.8
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.5e-139 500.7 454 58.4
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.5e-139 500.7 458 58.7
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 4.3e-139 499.2 452 58.6
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 5.6e-139 498.8 454 57.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 5.6e-139 498.8 453 59.6
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.8e-138 496.5 452 58.8
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.6e-138 496.1 452 58.6
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 4.8e-138 495.7 450 59.6
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.4e-137 494.2 453 57.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.2e-136 491.1 477 55.1
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 2.6e-136 490.0 451 58.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.4e-136 489.6 460 57.8
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.4e-136 489.6 451 57.4
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 5.8e-136 488.8 452 58.6
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 7.6e-136 488.4 451 57.2
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.3e-135 487.6 450 56.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.2e-135 486.9 450 56.4
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.9e-135 486.5 451 57.4
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-135 485.7 453 57.2
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 6.4e-135 485.3 453 58.3
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.1e-134 484.6 454 58.1
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.9e-134 483.8 458 57.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.9e-134 483.8 438 58.4
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.2e-134 483.0 457 56.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.2e-134 483.0 458 57.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 3.2e-134 483.0 458 56.3
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.2e-134 482.6 453 57.4
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.5e-134 482.3 454 57.7
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.6e-133 480.7 452 57.1
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.6e-133 480.7 452 57.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 2.1e-133 480.3 452 56.9
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.7e-133 479.9 453 57.2
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.0e-133 478.8 453 56.3
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 7.9e-133 478.4 463 56.8
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.3e-132 477.6 518 51.7
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.3e-132 477.6 449 56.3
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.8e-132 477.2 453 56.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-132 477.2 486 53.9
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-132 476.5 453 55.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.0e-132 476.5 452 57.7
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 6.7e-132 475.3 451 55.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 6.7e-132 475.3 451 55.9
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 6.7e-132 475.3 438 58.0
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 6.7e-132 475.3 454 55.7
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-131 474.6 452 56.2
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.1e-131 474.6 452 56.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.5e-131 474.2 475 54.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.5e-131 474.2 475 54.5
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 2.5e-131 473.4 455 55.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 9.6e-131 471.5 454 55.5
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 9.6e-131 471.5 461 55.5
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.3e-130 471.1 451 56.5
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.6e-130 470.7 452 56.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.6e-130 470.7 452 55.5
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 2.1e-130 470.3 438 56.4
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-130 470.3 464 55.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.8e-130 469.9 456 56.4
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 4.8e-130 469.2 452 55.1
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 8.1e-130 468.4 447 55.7
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.5e-128 464.2 452 54.9
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.6e-128 463.4 451 56.3
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 3.4e-128 463.0 452 55.1
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.8e-128 462.2 417 59.0
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 5.8e-128 462.2 452 55.1
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.0e-127 461.5 452 55.5
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.8e-127 459.5 468 53.8
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 8.4e-127 458.4 452 54.4
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 1.9e-126 457.2 453 54.5
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.2e-126 456.1 452 54.4
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.2e-126 456.1 481 50.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.6e-125 454.1 453 55.4
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.8e-124 450.7 454 54.4
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.1e-122 443.7 435 55.9
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.2e-120 438.0 454 52.9
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 4.5e-120 436.0 450 52.7
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.4e-118 431.0 448 53.3
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 3.2e-118 429.9 453 52.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.1e-117 427.2 481 51.1
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.0e-116 424.9 396 56.8
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 5.1e-116 422.5 445 53.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 2.2e-114 417.2 451 51.7
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.1e-113 413.3 396 55.1
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 4.1e-113 412.9 481 49.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 5.3e-113 412.5 405 53.6
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.6e-112 410.2 363 60.1
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 3.8e-111 406.4 382 57.9
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.5e-111 405.2 525 46.3
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.4e-110 404.4 343 63.6
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 3.6e-109 399.8 485 47.4
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 3.9e-108 396.4 556 44.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.7e-108 395.6 339 62.5
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 7.7e-104 382.1 404 53.2
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.0e-103 379.4 512 45.3
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.1e-102 378.3 338 58.9
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.5e-94 350.5 446 43.3
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.7e-93 346.3 449 47.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 8.2e-90 335.5 459 44.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.5e-88 330.1 516 40.7
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 3.0e-84 317.0 335 54.0
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.4e-81 307.4 443 44.7
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.5e-75 288.1 502 37.5
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.0e-63 248.8 308 45.5
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 3.9e-63 246.9 209 60.8
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 4.1e-57 226.9 350 39.7
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.6e-48 198.4 332 40.4
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.3e-47 195.3 213 47.4
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.6e-47 192.6 206 51.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 3.6e-45 187.2 161 62.1
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-40 171.4 273 41.8
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 6.9e-36 156.4 279 38.7
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.9e-36 156.4 263 41.4
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 5.8e-35 153.3 154 49.4
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.1e-32 144.8 130 63.1
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.8e-29 134.4 252 39.3
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 9.0e-28 129.4 246 38.6
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.5e-27 127.1 279 34.4
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 4.5e-27 127.1 101 59.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.9e-26 123.6 239 38.5
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 2.4e-25 121.3 190 41.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 3.2e-25 120.9 109 63.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 6.0e-24 116.7 96 63.5
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.9e-24 116.3 135 52.6
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-23 114.8 138 50.7
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-23 114.4 106 61.3
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 5.6e-22 110.2 105 50.5
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.6e-21 108.6 133 45.9
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-20 105.1 81 67.9
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.2e-19 102.4 129 43.4
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.3e-18 99.0 89 53.9
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 3.8e-18 97.4 242 31.8
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 9.3e-17 92.8 105 46.7
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 4.6e-16 90.5 139 37.4
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.1e-14 85.9 225 30.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 4.3e-14 84.0 228 31.1
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.8e-13 81.3 107 43.9
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.0e-12 77.4 85 50.6
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 4.5e-11 73.9 60 65.0
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.8e-11 73.6 100 48.0
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 7.6e-11 73.2 57 66.7
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 4.6e-08 63.9 89 37.1
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.0e-07 62.8 60 51.7
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 5.7e-06 57.0 64 54.7
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 5.7e-06 57.0 64 54.7
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 5.7e-06 57.0 64 54.7


User provided reference genes

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