Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.7e-145 519.2 250 100.0
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.9e-137 491.9 249 96.0
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.0e-114 416.0 250 78.4
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-99 366.3 249 68.7
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.4e-99 364.8 248 69.0
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 7.1e-99 364.4 249 68.7
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.2e-99 364.0 249 68.3
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 9.2e-99 364.0 249 67.9
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 1.2e-98 363.6 249 67.9
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.1e-98 362.8 249 69.5
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 3.5e-98 362.1 249 67.9
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 3.5e-98 362.1 249 68.7
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 6.0e-98 361.3 248 68.5
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 6.0e-98 361.3 249 67.9
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 6.0e-98 361.3 248 67.3
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 7.8e-98 360.9 248 69.0
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 7.8e-98 360.9 249 67.9
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.0e-97 360.5 249 68.3
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.0e-97 360.5 249 66.7
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.0e-97 360.5 249 66.7
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.7e-97 359.8 248 69.4
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 2.3e-97 359.4 249 66.7
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 2.3e-97 359.4 249 65.9
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.9e-97 358.6 249 66.7
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 3.9e-97 358.6 248 68.5
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 3.9e-97 358.6 249 67.1
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 5.1e-97 358.2 249 66.3
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 5.1e-97 358.2 249 66.7
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-96 356.7 249 66.7
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 1.5e-96 356.7 250 67.6
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-96 356.3 249 66.7
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.9e-96 356.3 248 68.1
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.9e-96 356.3 248 68.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.9e-96 356.3 249 65.9
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.9e-96 356.3 249 65.9
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.5e-96 355.9 249 67.1
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 2.5e-96 355.9 249 66.3
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-96 355.9 249 66.3
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.3e-96 355.5 250 66.8
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.3e-96 355.5 249 65.9
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 3.3e-96 355.5 249 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 5.6e-96 354.8 248 67.3
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 5.6e-96 354.8 250 66.4
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 7.3e-96 354.4 249 66.7
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 7.3e-96 354.4 249 66.3
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 7.3e-96 354.4 249 67.1
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 9.5e-96 354.0 249 67.1
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.2e-95 353.6 248 66.1
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.2e-95 353.6 249 65.9
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.2e-95 353.6 249 66.3
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 1.6e-95 353.2 249 65.5
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.6e-95 353.2 248 66.9
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 1.6e-95 353.2 248 66.1
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 2.1e-95 352.8 248 68.5
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 2.1e-95 352.8 249 65.1
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.8e-95 352.4 249 65.5
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 2.8e-95 352.4 249 65.5
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.8e-95 352.4 249 66.3
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.6e-95 352.1 261 63.2
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 3.6e-95 352.1 248 66.5
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 3.6e-95 352.1 248 66.5
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 6.2e-95 351.3 248 65.7
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 6.2e-95 351.3 248 65.7
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 6.2e-95 351.3 248 66.1
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 8.1e-95 350.9 250 66.0
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.1e-94 350.5 249 66.7
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.4e-94 350.1 249 67.5
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.4e-94 350.1 249 67.5
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 1.4e-94 350.1 249 66.3
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-94 349.7 249 64.7
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.8e-94 349.7 249 64.3
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 1.8e-94 349.7 249 64.7
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.8e-94 349.7 249 65.5
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 1.8e-94 349.7 247 66.8
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.3e-94 349.4 249 67.5
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-94 349.4 255 64.7
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-94 349.4 255 64.7
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 3.1e-94 349.0 248 66.9
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.1e-94 349.0 249 67.5
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 3.1e-94 349.0 249 66.3
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.1e-94 349.0 248 65.7
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.1e-94 349.0 248 65.7
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 4.0e-94 348.6 249 65.1
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 4.0e-94 348.6 253 64.8
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-94 348.6 255 64.3
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 6.8e-94 347.8 248 65.7
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.2e-93 347.1 249 67.1
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.5e-93 346.7 248 65.3
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-93 346.7 249 64.3
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 2.6e-93 345.9 250 65.6
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 5.8e-93 344.7 251 64.5
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 9.9e-93 344.0 251 63.7
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.3e-92 343.6 285 60.0
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.3e-92 343.6 249 64.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.7e-92 343.2 251 64.1
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 2.2e-92 342.8 249 64.7
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 2.9e-92 342.4 250 65.2
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 4.9e-92 341.7 248 64.5
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-91 340.5 249 65.1
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.1e-91 340.5 249 63.9
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.1e-91 340.5 249 67.1
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.9e-91 339.7 265 63.4
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 9.2e-91 337.4 248 64.1
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.7e-90 335.9 251 63.7
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 4.6e-90 335.1 237 67.1
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.7e-89 333.2 249 64.3
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 8.6e-89 330.9 249 63.5
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 2.5e-88 329.3 249 64.7
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.6e-88 328.2 248 61.3
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 3.6e-87 325.5 249 63.5
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 3.1e-86 322.4 249 60.2
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 4.0e-86 322.0 232 65.1
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 4.0e-86 322.0 249 61.4
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 8.9e-86 320.9 275 57.1
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 8.9e-86 320.9 249 62.7
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 8.9e-86 320.9 249 59.8
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.5e-85 320.1 249 61.8
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 2.0e-85 319.7 249 63.1
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.6e-85 319.3 249 60.6
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 7.6e-85 317.8 249 61.0
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.3e-84 317.0 248 61.7
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-84 315.8 224 66.5
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 4.9e-84 315.1 248 60.9
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 1.9e-83 313.2 249 61.4
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.4e-83 311.6 249 59.8
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.6e-82 310.1 249 59.4
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 2.1e-82 309.7 249 59.8
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.3e-81 307.0 239 61.9
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.1e-81 305.1 249 58.6
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 8.7e-81 304.3 249 59.4
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.9e-80 303.1 249 59.4
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 2.5e-80 302.8 249 59.0
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.6e-80 301.6 254 58.7
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.8e-78 296.6 224 63.4
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.1e-78 295.8 251 57.0
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.9e-78 294.7 251 55.8
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.9e-78 294.7 251 55.8
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.5e-77 293.5 251 56.6
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-77 293.5 257 54.5
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-77 293.5 251 56.6
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.8e-76 288.9 257 54.1
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-76 288.5 257 54.1
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-73 279.6 242 57.9
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 3.0e-73 279.3 249 54.6
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.9e-72 276.6 213 63.4
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-72 276.6 250 52.0
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-71 273.9 250 52.0
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 2.8e-71 272.7 251 52.6
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.3e-70 268.5 191 64.9
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 2.0e-69 266.5 251 51.4
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.1e-67 260.8 199 63.3
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.5e-64 249.6 188 62.2
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 4.8e-63 245.4 194 59.8
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.5e-51 206.5 251 44.6
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.3e-47 194.1 252 43.3
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.0e-45 186.8 173 52.6
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-43 181.0 134 62.7
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.9e-43 180.3 121 66.1
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.6e-42 176.0 158 55.1
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 5.1e-41 172.2 129 62.0
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-36 157.5 166 50.0
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.0e-32 143.7 255 36.1
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 4.2e-27 125.9 93 60.2
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 1.0e-25 121.3 84 65.5
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 1.8e-25 120.6 82 69.5
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 5.2e-25 119.0 76 67.1
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 9.7e-24 114.8 249 31.3
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 2.8e-15 86.7 61 59.0
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 2.8e-15 86.7 87 47.1
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-14 83.6 46 76.1
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 1.9e-11 73.9 49 65.3
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 1.9e-11 73.9 49 65.3
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 1.6e-10 70.9 86 40.7
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.0e-09 66.2 46 60.9
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.0e-09 66.2 67 47.8


User provided reference genes

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