Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.4e-45 184.5 85 100.0
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.0e-41 172.9 79 100.0
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 1.3e-12 76.3 41 82.9
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 1.3e-12 76.3 41 85.4
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 1.7e-12 75.9 39 89.7
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 1.7e-12 75.9 48 75.0
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.2e-12 75.5 41 85.4
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 2.9e-12 75.1 36 91.7
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 5.0e-12 74.3 41 78.0
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 5.0e-12 74.3 61 60.7
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 8.5e-12 73.6 34 97.1
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 8.5e-12 73.6 34 97.1
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 8.5e-12 73.6 39 89.7
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.5e-12 73.6 34 97.1
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.5e-12 73.6 34 97.1
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.5e-12 73.6 34 97.1
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-11 73.2 37 89.2
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-11 73.2 37 89.2
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-11 73.2 37 89.2
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-11 73.2 37 89.2
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-11 73.2 37 89.2
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-11 73.2 37 89.2
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.4e-11 72.8 43 74.4
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 2.5e-11 72.0 38 86.8
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 3.2e-11 71.6 36 88.9
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.2e-11 71.6 37 91.9
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 3.2e-11 71.6 36 91.7
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 4.2e-11 71.2 45 71.1
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 4.2e-11 71.2 44 70.5
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 5.5e-11 70.9 44 75.0
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 5.5e-11 70.9 69 53.6
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 5.5e-11 70.9 34 94.1
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 7.2e-11 70.5 35 88.6
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 7.2e-11 70.5 35 88.6
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 7.2e-11 70.5 35 88.6
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 7.2e-11 70.5 41 75.6
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 7.2e-11 70.5 53 64.2
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 7.2e-11 70.5 38 84.2
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 9.4e-11 70.1 38 81.6
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 9.4e-11 70.1 38 81.6
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 9.4e-11 70.1 42 76.2
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.2e-10 69.7 35 88.6
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.2e-10 69.7 35 88.6
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 1.2e-10 69.7 35 88.6
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 2.1e-10 68.9 31 96.8
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 2.1e-10 68.9 34 91.2
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.1e-10 68.9 34 91.2
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.1e-10 68.9 34 91.2
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.1e-10 68.9 34 91.2
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 2.1e-10 68.9 35 88.6
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 2.1e-10 68.9 31 96.8
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 2.1e-10 68.9 34 91.2
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.1e-10 68.9 34 91.2
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-10 68.9 36 83.3
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-10 68.9 36 83.3
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 2.1e-10 68.9 34 91.2
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 2.7e-10 68.6 43 76.7
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.7e-10 68.6 36 83.3
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 6.1e-10 67.4 34 85.3
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 1.8e-09 65.9 75 50.7
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 3.9e-09 64.7 36 80.6
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 5.1e-09 64.3 44 68.2
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 6.7e-09 63.9 35 82.9
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 8.8e-09 63.5 47 68.1
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 1.1e-08 63.2 42 71.4
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-08 63.2 30 93.3
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-08 63.2 30 93.3
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.1e-08 63.2 32 90.6
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 1.9e-08 62.4 35 80.0
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.5e-08 62.0 37 75.7
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 3.3e-08 61.6 36 80.6
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-08 61.6 47 63.8
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 3.3e-08 61.6 48 60.4
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 4.3e-08 61.2 36 77.8
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.3e-08 61.2 35 74.3
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.3e-08 61.2 35 74.3
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 5.7e-08 60.8 36 77.8
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 7.4e-08 60.5 31 87.1
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.7e-07 59.3 31 83.9
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 2.2e-07 58.9 30 90.0
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.2e-07 58.9 30 90.0
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.2e-07 58.9 30 90.0
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.2e-07 58.9 30 90.0
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.2e-07 58.9 30 90.0
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 3.7e-07 58.2 34 76.5
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 1.8e-06 55.8 37 67.6


User provided reference genes

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