Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 0.0e+00 1943.7 999 100.0
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 0.0e+00 1191.4 990 59.8
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 6.1e-295 1017.7 976 53.3
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 2.7e-290 1002.3 989 52.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 1.0e-289 1000.3 990 52.4
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.3e-289 999.2 980 52.0
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.3e-289 999.2 978 52.0
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.3e-289 999.2 978 52.9
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 5.0e-289 998.0 985 53.3
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 5.0e-289 998.0 991 51.5
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 1.9e-288 996.1 990 52.8
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.5e-288 995.7 977 52.6
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.5e-288 993.8 980 51.4
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 3.6e-287 991.9 992 51.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 3.6e-287 991.9 984 51.6
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 2.3e-286 989.2 988 50.4
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 4.0e-286 988.4 998 51.7
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 5.2e-286 988.0 997 51.5
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 5.2e-286 988.0 991 52.5
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 6.8e-286 987.6 989 51.4
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 8.9e-286 987.3 978 51.1
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 8.9e-286 987.3 977 51.9
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 1.2e-285 986.9 997 51.8
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.2e-285 986.9 996 51.6
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 4.4e-285 984.9 993 51.1
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 9.8e-285 983.8 989 51.1
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 1.3e-284 983.4 996 50.6
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 1.3e-284 983.4 1001 51.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.7e-284 983.0 1001 51.4
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 1.7e-284 983.0 998 50.3
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 2.2e-284 982.6 996 50.8
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 2.9e-284 982.2 992 51.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.9e-284 982.2 1001 51.6
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 3.7e-284 981.9 996 50.9
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.7e-284 981.9 991 51.7
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 4.9e-284 981.5 978 50.7
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 4.9e-284 981.5 987 50.7
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 6.4e-284 981.1 965 53.0
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 1.1e-283 980.3 992 51.2
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 1.1e-283 980.3 984 50.9
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 1.4e-283 979.9 981 50.9
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 1.9e-283 979.5 1001 51.2
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.4e-283 979.2 977 51.4
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 3.2e-283 978.8 988 50.6
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 4.1e-283 978.4 996 50.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 4.1e-283 978.4 992 50.8
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.4e-283 978.0 977 51.3
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 7.0e-283 977.6 989 51.0
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 7.0e-283 977.6 979 50.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 9.2e-283 977.2 982 51.4
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 9.2e-283 977.2 1001 51.4
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 1.6e-282 976.5 1011 50.0
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 2.0e-282 976.1 989 50.3
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 4.6e-282 974.9 1001 50.4
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 7.8e-282 974.2 1002 51.0
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 1.0e-281 973.8 989 50.9
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 1.0e-281 973.8 989 50.2
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 1.7e-281 973.0 989 50.6
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 2.3e-281 972.6 989 50.5
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 2.3e-281 972.6 988 50.9
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 3.9e-281 971.8 990 50.8
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 3.9e-281 971.8 998 50.7
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 5.0e-281 971.5 990 50.8
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 5.0e-281 971.5 977 51.2
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 6.6e-281 971.1 996 50.6
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 8.6e-281 970.7 990 50.2
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 8.6e-281 970.7 997 50.7
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 2.5e-280 969.1 991 50.8
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 2.5e-280 969.1 989 49.9
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 4.3e-280 968.4 989 50.5
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 1.2e-279 966.8 982 50.2
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 1.2e-279 966.8 992 51.1
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 1.6e-279 966.5 988 50.5
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 1.6e-279 966.5 992 51.0
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 2.1e-279 966.1 993 50.4
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 2.8e-279 965.7 1009 50.0
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 2.8e-279 965.7 992 51.0
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 3.6e-279 965.3 962 51.8
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 3.6e-279 965.3 988 49.5
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 8.0e-279 964.1 983 50.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 1.1e-278 963.8 988 50.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.1e-278 962.2 989 52.0
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 4.0e-278 961.8 992 50.9
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 5.2e-278 961.4 989 50.3
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 1.2e-277 960.3 981 51.7
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 2.6e-277 959.1 1021 49.2
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 9.8e-277 957.2 1078 48.4
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 2.9e-276 955.7 995 49.2
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 6.4e-276 954.5 983 50.4
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 6.4e-276 954.5 1004 51.0
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.1e-275 953.7 992 50.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 1.9e-275 953.0 1019 48.5
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 2.4e-275 952.6 996 49.5
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.4e-275 952.6 1001 50.9
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 5.4e-275 951.4 1016 49.3
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 7.1e-275 951.0 979 50.5
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 1.0e-273 947.2 1003 50.0
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 1.5e-272 943.3 990 50.3
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 1.9e-272 943.0 990 48.9
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 2.5e-272 942.6 1002 49.3
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 3.3e-272 942.2 1016 48.9
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 4.3e-272 941.8 990 50.6
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 1.6e-271 939.9 994 50.4
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 1.8e-270 936.4 997 47.4
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 4.0e-270 935.3 1001 49.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 1.3e-268 930.2 1007 47.6
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 1.3e-268 930.2 994 48.4
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 2.2e-268 929.5 996 49.3
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 2.2e-268 929.5 998 47.7
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 8.3e-268 927.5 998 47.5
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 1.4e-267 926.8 1085 47.1
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 1.9e-267 926.4 1001 47.7
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.2e-267 925.6 996 49.2
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 1.6e-266 923.3 965 51.0
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 7.3e-264 914.4 1011 47.7
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 3.6e-263 912.1 963 50.7
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.0e-257 892.5 919 50.4
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 8.7e-257 891.0 988 48.3
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.7e-252 876.7 912 49.8
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 1.4e-251 873.6 995 48.3
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 6.6e-249 864.8 996 46.2
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.6e-242 843.6 902 50.6
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 7.9e-242 841.3 1017 44.5
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 7.9e-242 841.3 868 50.9
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 6.2e-239 831.6 971 46.7
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 4.5e-237 825.5 858 50.1
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 7.9e-234 814.7 820 51.7
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.1e-232 810.8 858 49.4
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 1.8e-222 776.9 884 46.8
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.2e-187 659.8 544 59.9
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 1.4e-161 574.7 672 46.4
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.3e-153 547.4 532 52.4
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.1e-153 547.0 694 41.9
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 7.6e-144 515.8 669 43.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-139 500.0 849 38.2
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.3e-129 466.5 365 62.2
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 3.8e-119 433.7 1062 32.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.7e-117 427.6 926 31.5
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.6e-114 418.3 1012 32.7
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.4e-112 410.6 296 67.9
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 3.2e-110 404.1 296 67.2
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.8e-106 391.0 812 32.6
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.2e-104 385.6 282 65.6
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.7e-84 316.6 252 59.9
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.1e-81 307.4 422 41.7
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 3.0e-76 291.2 445 38.4
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.5e-62 245.7 475 36.0
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.2e-56 226.1 185 61.1
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.9e-50 204.1 325 37.5
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 3.5e-48 198.0 1034 24.5
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.1e-46 193.0 145 67.6
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 3.1e-44 184.9 129 67.4
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.2e-42 178.7 125 68.0
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 2.2e-42 178.7 383 33.4
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.5e-38 165.2 105 69.5
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.1e-37 162.2 125 64.0
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 2.1e-37 162.2 311 34.1
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.2e-35 156.4 125 56.8
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 3.3e-30 138.3 200 43.5
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 4.7e-29 134.4 106 57.5
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 4.7e-29 134.4 106 57.5
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 6.2e-29 134.0 260 36.9
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 8.1e-29 133.7 106 57.5
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 4.0e-28 131.3 325 29.8
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.3e-23 116.3 256 32.0
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.7e-23 115.9 85 65.9
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.8e-15 89.4 117 46.2
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.8e-15 89.4 117 46.2
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 2.3e-15 89.0 52 76.9
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.9e-15 88.2 77 58.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.9e-14 85.9 63 57.1
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 8.1e-13 80.5 50 68.0
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 1.8e-12 79.3 68 60.3
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 9.0e-12 77.0 60 58.3
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.2e-10 72.4 113 35.4
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 2.9e-10 72.0 48 68.8
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.9e-10 71.2 113 35.4
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.6e-08 66.2 124 31.5
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 1.8e-07 62.8 45 55.6
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 3.0e-07 62.0 63 50.8
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.5e-06 58.9 85 38.8


User provided reference genes

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