Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 0.0e+00 2451.0 1274 100.0
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 0.0e+00 1355.5 1252 61.0
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.3e-305 1053.5 1180 53.2
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 2.5e-301 1039.3 1294 48.9
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.5e-250 870.5 1291 43.6
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 5.7e-237 825.5 1267 42.4
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 3.7e-236 822.8 1215 42.7
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 4.1e-235 819.3 1285 41.6
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 5.3e-235 818.9 1268 42.3
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 7.0e-235 818.5 1268 42.3
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 2.0e-234 817.0 1274 42.5
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 2.9e-233 813.1 1279 41.5
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 1.5e-232 810.8 1274 42.7
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 6.1e-231 805.4 1263 42.1
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 2.3e-230 803.5 1260 42.5
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 5.2e-230 802.4 1270 40.7
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 8.8e-230 801.6 1192 42.7
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 2.0e-229 800.4 1305 41.5
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 2.0e-229 800.4 1249 41.6
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 3.3e-229 799.7 1280 41.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 5.7e-229 798.9 1272 42.1
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 1.3e-228 797.7 1279 41.8
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 1.3e-228 797.7 1213 42.8
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 1.7e-228 797.3 1268 41.2
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 2.8e-228 796.6 1239 42.3
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 8.2e-228 795.0 1294 40.0
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 1.1e-227 794.7 1264 40.5
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 1.8e-227 793.9 1277 42.1
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 9.1e-227 791.6 1274 40.3
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 1.6e-226 790.8 1277 41.2
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 3.5e-226 789.6 1279 41.5
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 7.7e-226 788.5 1245 42.0
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.3e-225 787.7 1251 41.9
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 2.2e-225 786.9 1242 41.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 2.9e-225 786.6 1275 41.9
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 2.9e-225 786.6 1280 40.5
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 5.0e-225 785.8 1273 41.3
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 5.5e-224 782.3 1255 41.4
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 1.6e-223 780.8 1219 41.4
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.6e-223 780.8 1253 41.1
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 2.1e-223 780.4 1307 40.8
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 2.7e-223 780.0 1321 40.4
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 3.6e-223 779.6 1318 40.6
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 3.6e-223 779.6 1318 40.6
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.0e-222 778.1 1282 41.0
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 1.0e-222 778.1 1255 40.4
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 4.0e-222 776.2 1258 40.2
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 6.8e-222 775.4 1232 41.0
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 1.5e-221 774.2 1217 41.2
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 3.4e-221 773.1 1184 42.8
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 2.2e-220 770.4 1228 40.8
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 1.8e-219 767.3 1212 41.3
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 2.4e-219 766.9 1237 40.5
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 2.4e-219 766.9 1253 41.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 7.0e-219 765.4 1300 40.0
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.2e-218 764.6 1526 37.0
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 2.0e-218 763.8 1292 40.5
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 2.7e-218 763.5 1269 40.9
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-218 763.1 1280 40.5
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-218 762.7 1280 40.4
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 1.3e-217 761.1 1288 40.9
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 1.3e-217 761.1 1264 40.7
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 5.0e-217 759.2 1280 41.3
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-216 757.3 1280 40.3
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 4.2e-216 756.1 1247 40.3
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 9.5e-216 755.0 1249 39.8
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.1e-215 753.8 1272 39.9
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 3.6e-215 753.1 1264 40.3
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 4.7e-215 752.7 1254 40.7
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 4.7e-215 752.7 1282 39.8
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 5.2e-214 749.2 1262 39.2
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 3.4e-213 746.5 1230 39.8
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 3.4e-213 746.5 1282 39.4
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-212 742.3 1228 40.3
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 8.3e-212 741.9 1251 39.3
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 8.3e-212 741.9 1229 39.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 1.1e-211 741.5 1262 39.9
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 2.4e-211 740.3 1251 39.6
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 2.4e-211 740.3 1251 39.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 5.9e-210 735.7 1273 39.7
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 1.0e-209 734.9 1244 40.3
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 1.7e-209 734.2 1279 39.3
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 3.8e-209 733.0 1255 39.3
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 1.5e-208 731.1 1269 39.2
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 9.5e-208 728.4 1261 38.8
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 4.7e-207 726.1 1249 39.7
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 3.0e-206 723.4 1273 38.7
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 7.5e-205 718.8 1263 39.4
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 2.0e-202 710.7 1411 37.5
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 5.0e-201 706.1 1241 38.6
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 1.9e-200 704.1 1298 38.6
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 4.3e-200 703.0 1241 39.2
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 1.4e-198 698.0 1300 37.7
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.7e-196 689.9 1301 37.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 7.5e-189 665.6 1260 37.5
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 4.1e-187 659.8 1296 37.7
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 7.1e-187 659.1 1166 38.3
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 4.7e-183 646.4 1481 34.2
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 4.7e-183 646.4 1226 37.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 1.1e-179 635.2 1180 37.5
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 1.1e-174 618.6 1256 37.3
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 6.4e-172 609.4 881 42.8
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.6e-167 594.7 1098 37.2
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 6.2e-167 592.8 1251 35.0
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 1.3e-164 585.1 1196 35.5
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 6.4e-164 582.8 1130 36.5
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.1e-162 577.8 1196 35.3
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 3.3e-160 570.5 1119 37.1
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 5.6e-160 569.7 1250 34.9
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 7.6e-157 559.3 968 38.3
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 5.1e-153 546.6 1009 37.0
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 2.6e-133 481.1 794 38.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 7.7e-133 479.6 778 41.1
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-125 453.8 700 39.6
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.9e-124 451.1 665 40.9
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 2.0e-112 411.8 749 38.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.2e-111 408.3 711 37.0
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.8e-111 407.1 722 38.1
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 9.1e-102 376.3 646 37.8
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 4.5e-101 374.0 630 39.4
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 8.6e-100 369.8 725 36.0
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.1e-81 309.7 620 35.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.0e-73 281.2 538 35.1
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 7.1e-62 243.8 488 37.9
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.6e-61 242.7 498 37.3
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.9e-57 227.3 263 47.9
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.9e-54 219.2 459 37.0
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.3e-50 206.5 387 37.5
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 6.2e-50 204.1 421 38.0
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 2.2e-47 195.7 372 37.4
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.0e-45 187.6 240 51.7
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 2.3e-44 185.7 352 36.6
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 6.7e-44 184.1 291 40.2
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.5e-43 182.2 212 50.9
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 5.3e-41 174.5 130 66.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-40 171.4 268 43.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 8.7e-36 157.1 315 35.6
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.7e-36 157.1 421 32.5
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.0e-31 143.7 487 30.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 2.2e-31 142.5 178 42.1
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.6e-29 136.3 269 34.6
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-22 113.2 148 48.6
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.6e-21 108.2 64 81.2
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 6.1e-21 107.8 108 51.9
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.8e-20 106.3 174 39.7
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.9e-20 105.1 266 32.0
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-12 80.1 175 36.0
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.3e-12 79.3 215 34.9
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.3e-10 71.2 100 50.0
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 8.2e-10 70.9 101 49.5
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 9.1e-09 67.4 94 38.3
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 2.0e-08 66.2 70 48.6
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.6e-08 65.9 70 52.9
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.7e-07 63.2 186 33.3
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.5e-07 60.8 95 36.8
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 8.5e-07 60.8 60 58.3
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.5e-06 59.3 148 35.1


User provided reference genes

Program Settings