Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.2e-288 995.7 488 100.0
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.6e-102 377.5 489 44.0
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 3.0e-85 320.1 281 52.3
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 2.0e-81 307.4 278 50.7
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 4.5e-81 306.2 306 50.0
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 7.6e-81 305.4 302 49.3
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.9e-80 302.8 279 52.0
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.9e-79 300.8 308 46.8
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.9e-79 300.8 318 48.7
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 3.2e-79 300.1 311 47.3
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 7.1e-79 298.9 321 46.7
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.2e-78 298.1 314 47.5
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.6e-78 297.7 278 50.7
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 3.5e-78 296.6 301 49.2
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 3.5e-78 296.6 315 48.3
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.3e-77 294.7 304 49.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.3e-77 294.7 304 49.7
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 1.3e-77 294.7 311 46.3
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 3.0e-77 293.5 332 46.7
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.1e-77 292.7 279 50.5
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 8.7e-77 292.0 358 43.3
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 8.7e-77 292.0 300 48.3
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.1e-76 291.6 300 48.0
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.5e-76 291.2 297 47.8
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.5e-76 291.2 312 48.4
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.9e-76 290.8 310 48.4
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.9e-76 290.8 303 47.5
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 3.3e-76 290.0 281 50.2
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 4.3e-76 289.7 285 50.2
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 4.3e-76 289.7 284 48.9
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 7.4e-76 288.9 276 50.0
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 9.6e-76 288.5 284 48.6
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-75 287.7 286 47.2
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 2.1e-75 287.3 279 50.9
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 2.1e-75 287.3 287 49.5
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 2.1e-75 287.3 278 48.2
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 3.6e-75 286.6 444 37.4
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 6.2e-75 285.8 299 47.2
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 8.1e-75 285.4 313 47.0
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 1.1e-74 285.0 323 44.0
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.1e-74 285.0 318 47.5
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.1e-74 285.0 280 49.3
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.1e-74 285.0 284 47.9
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.4e-74 284.6 300 47.7
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.8e-74 284.3 341 42.8
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.3e-74 282.7 279 47.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 5.3e-74 282.7 267 49.8
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.2e-73 281.6 280 47.9
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.2e-73 281.6 305 46.2
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.2e-73 281.6 291 46.7
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 1.5e-73 281.2 307 46.9
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.5e-73 281.2 276 48.2
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 4.9e-72 276.2 314 42.7
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 4.9e-72 276.2 309 46.6
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 8.4e-72 275.4 306 46.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 7.1e-71 272.3 367 40.3
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.2e-70 271.6 261 49.8
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 4.6e-70 269.6 279 48.0
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.0e-69 268.5 299 44.1
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.3e-69 268.1 315 43.8
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.3e-69 268.1 275 47.3
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.8e-69 267.7 278 44.6
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 3.0e-69 266.9 277 46.2
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 6.7e-69 265.8 322 41.9
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.1e-68 265.0 261 49.0
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.1e-68 265.0 314 44.9
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.5e-68 264.6 363 40.8
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.5e-68 264.6 281 46.6
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.5e-68 264.6 298 46.0
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.9e-68 264.2 278 48.2
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 5.6e-68 262.7 278 45.7
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 7.4e-68 262.3 299 43.1
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 4.8e-67 259.6 278 45.7
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 4.8e-67 259.6 301 42.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.1e-66 258.5 301 42.9
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.8e-66 257.7 278 45.3
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 2.4e-66 257.3 285 43.9
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.4e-66 257.3 321 42.4
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 3.1e-66 256.9 328 43.0
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 3.1e-66 256.9 283 44.2
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 4.0e-66 256.5 268 47.0
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 4.0e-66 256.5 280 45.7
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 9.0e-66 255.4 327 43.1
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.5e-65 254.6 314 42.7
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 3.4e-65 253.4 307 45.0
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.5e-65 253.1 339 41.0
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.5e-65 253.1 257 49.0
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.3e-64 251.5 285 43.5
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 2.9e-64 250.4 358 39.7
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 2.5e-63 247.3 275 44.4
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 4.2e-63 246.5 275 44.7
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 2.7e-62 243.8 295 41.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.7e-62 243.8 286 44.8
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.0e-61 241.9 276 43.5
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.1e-61 239.6 275 45.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.3e-60 236.9 276 42.4
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.3e-60 236.9 240 48.8
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 4.3e-60 236.5 275 45.5
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.2e-57 228.4 467 34.3
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.5e-57 228.0 322 39.8
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 1.5e-57 228.0 228 48.2
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.7e-56 224.6 290 42.8
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.8e-56 223.4 215 52.1
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 1.1e-55 221.9 219 47.9
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 1.4e-55 221.5 234 43.2
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.9e-55 221.1 326 39.6
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 2.1e-54 217.6 286 40.9
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.7e-54 217.2 327 39.8
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 4.6e-54 216.5 309 39.8
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.3e-51 208.4 328 38.1
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.2e-49 201.8 191 51.8
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 2.2e-48 197.6 297 38.4
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 3.2e-47 193.7 257 40.9
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 3.0e-45 187.2 186 49.5
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.4e-42 178.3 209 44.0
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 2.4e-42 177.6 186 43.5
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.3e-42 176.4 185 44.9
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 3.4e-41 173.7 335 35.2
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 4.5e-41 173.3 316 34.8
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 2.7e-38 164.1 168 49.4
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 4.1e-34 150.2 181 40.9
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.5e-33 146.7 120 60.8
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 5.5e-31 139.8 120 55.0
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 6.1e-30 136.3 162 42.6
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 4.4e-28 130.2 112 51.8
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.8e-26 124.8 195 37.4
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.0e-21 107.5 95 47.4
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 2.0e-20 104.8 94 50.0
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 5.7e-20 103.2 93 47.3
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 7.5e-20 102.8 95 44.2
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 8.3e-19 99.4 76 59.2
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.4e-18 98.6 93 47.3
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.8e-18 98.2 90 51.1
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.8e-18 98.2 88 46.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.7e-16 91.7 84 46.4
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.7e-16 91.7 87 46.0
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 6.5e-16 89.7 95 41.1
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 2.6e-12 77.8 139 38.1
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 3.8e-08 63.9 49 65.3


User provided reference genes

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