Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_3650 Physcomitrium patens HOM05D011382 ORTHO05D002895 1.7e-235 818.9 395 100.0
Pp3c5_2310 Physcomitrium patens HOM05D011382 ORTHO05D315424 8.4e-46 188.7 413 31.5
Pp3c15_23620 Physcomitrium patens HOM05D011382 ORTHO05D311375 3.5e-44 183.3 390 32.3
Pp3c2_32940 Physcomitrium patens HOM05D011382 ORTHO05D316563 1.1e-42 178.3 402 30.6
Pp3c22_15880 Physcomitrium patens HOM05D011382 ORTHO05D313128 2.4e-40 170.6 397 30.5
Pp3c10_1600 Physcomitrium patens HOM05D011382 ORTHO05D317580 3.4e-39 166.8 405 30.1
Pp3c15_23690 Physcomitrium patens HOM05D011382 ORTHO05D312763 2.4e-37 160.6 345 32.2
Pp3c10_1580 Physcomitrium patens HOM05D011382 ORTHO05D315360 2.7e-36 157.1 405 31.6
Pp3c18_20430 Physcomitrium patens HOM05D011382 ORTHO05D312826 3.0e-35 153.7 298 34.6
Pp3c9_24660 Physcomitrium patens HOM05D011382 ORTHO05D312881 5.1e-35 152.9 395 28.4
Pp3c3_330 Physcomitrium patens HOM05D011382 ORTHO05D316477 2.8e-33 147.1 364 32.1
Pp3c4_22330 Physcomitrium patens HOM05D011382 ORTHO05D314084 8.1e-33 145.6 340 30.0
Pp3c6_7720 Physcomitrium patens HOM05D011382 ORTHO05D308313 9.9e-31 138.7 388 28.4
Pp3c24_1980 Physcomitrium patens HOM05D003005 ORTHO05D004563 2.2e-22 110.9 280 28.2
Pp3c9_2230 Physcomitrium patens HOM05D011382 ORTHO05D309008 3.8e-22 110.2 311 29.9
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 8.2e-17 92.4 244 31.6
AagrBONN_evm.TU.Sc2ySwM_362.1622 Anthoceros agrestis HOM05D002809 ORTHO05D004563 1.1e-16 92.0 281 28.5
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.4e-16 91.7 240 30.8
AagrBONN_evm.TU.Sc2ySwM_228.4047 Anthoceros agrestis HOM05D004302 ORTHO05D010190 4.1e-16 90.1 263 28.9
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 4.1e-16 90.1 232 26.3
Pp3c4_21230 Physcomitrium patens HOM05D002809 ORTHO05D050338 4.1e-16 90.1 290 25.2
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.2e-15 88.6 262 28.6
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 5.9e-15 86.3 262 29.8
Pp3c14_15830 Physcomitrium patens HOM05D002809 ORTHO05D009385 7.7e-15 85.9 247 27.1
MapolyY_A0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.3e-14 85.1 240 26.2
Pp3c15_17390 Physcomitrium patens HOM05D002809 ORTHO05D004939 5.0e-14 83.2 240 29.6
Pp3c9_20960 Physcomitrium patens HOM05D002809 ORTHO05D004939 6.5e-14 82.8 242 29.8
Pp3c26_14690 Physcomitrium patens HOM05D004302 ORTHO05D004939 1.1e-13 82.0 265 26.4
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.5e-13 79.7 239 29.7
Solyc02g089310.1 Solanum lycopersicum HOM05D004302 ORTHO05D004939 5.5e-13 79.7 236 28.8
Sopen02g034090 Solanum pennellii HOM05D004302 ORTHO05D004939 5.5e-13 79.7 236 28.8
PGSC0003DMG400001472 Solanum tuberosum HOM05D004302 ORTHO05D004939 5.5e-13 79.7 236 28.8
Pp3c15_11120 Physcomitrium patens HOM05D002809 ORTHO05D010190 7.2e-13 79.3 319 22.9
Glyma.18G275900 Glycine max HOM05D004302 ORTHO05D004939 1.2e-12 78.6 234 29.9
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.2e-12 78.6 246 27.2
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 1.2e-12 78.6 283 25.4
Aqoxy3G00570 Aquilegia oxysepala HOM05D004302 ORTHO05D004939 2.1e-12 77.8 237 28.7
CSS0037679 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 2.1e-12 77.8 235 29.4
Hund13664 Selenicereus undatus HOM05D004302 ORTHO05D004939 2.7e-12 77.4 236 29.2
AagrBONN_evm.TU.Sc2ySwM_228.1930 Anthoceros agrestis HOM05D004302 ORTHO05D004939 3.6e-12 77.0 280 27.5
Cc07_g04590 Coffea canephora HOM05D004302 ORTHO05D004939 4.6e-12 76.6 236 28.8
Hma1.2p1_0448F.1_g154860 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 4.6e-12 76.6 237 30.0
Lj4P125T69 Lonicera japonica HOM05D004302 ORTHO05D004939 4.6e-12 76.6 236 28.8
Nitab4.5_0001339g0010 Nicotiana tabacum HOM05D004302 ORTHO05D004939 4.6e-12 76.6 236 28.0
Nitab4.5_0002978g0090 Nicotiana tabacum HOM05D004302 ORTHO05D004939 4.6e-12 76.6 236 28.0
THA.LOC104820986 Tarenaya hassleriana HOM05D004302 ORTHO05D004939 6.1e-12 76.3 236 28.0
Migut.L01495 Erythranthe guttata HOM05D004302 ORTHO05D004939 7.9e-12 75.9 236 26.7
HanXRQChr14g0452511 Helianthus annuus HOM05D004302 ORTHO05D004939 7.9e-12 75.9 236 28.8
EL10Ac2g04421 Beta vulgaris HOM05D004302 ORTHO05D004939 1.0e-11 75.5 236 28.8
CAN.G497.49 Capsicum annuum HOM05D004302 ORTHO05D004939 1.0e-11 75.5 236 28.0
SalBow1G5644 Salvia bowleyana HOM05D004302 ORTHO05D004939 1.0e-11 75.5 236 28.0
Ciclev10011780m.g Citrus clementina HOM05D004302 ORTHO05D004939 1.4e-11 75.1 236 29.2
Thecc.04G108800 Theobroma cacao HOM05D004302 ORTHO05D004939 1.4e-11 75.1 236 28.8
CARHR197630 Cardamine hirsuta HOM05D004302 ORTHO05D004939 1.8e-11 74.7 237 27.4
COL.COLO4_10644 Corchorus olitorius HOM05D004302 ORTHO05D004939 1.8e-11 74.7 236 28.8
Gohir.D08G061666 Gossypium hirsutum HOM05D004302 ORTHO05D004939 1.8e-11 74.7 236 29.7
Manes.02G061000 Manihot esculenta HOM05D004302 ORTHO05D004939 1.8e-11 74.7 236 28.4
unitig_736.g22264 Utricularia gibba HOM05D004302 ORTHO05D004939 1.8e-11 74.7 236 28.0
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 2.3e-11 74.3 244 27.5
Lsat_1_v5_gn_2_89480 Lactuca sativa HOM05D004302 ORTHO05D004939 2.3e-11 74.3 236 27.5
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 2.3e-11 74.3 235 28.5
Prupe.3G247500 Prunus persica HOM05D004302 ORTHO05D004939 2.3e-11 74.3 236 28.4
AUR62009461 Chenopodium quinoa HOM05D004302 ORTHO05D004939 3.0e-11 73.9 236 28.4
AUR62023143 Chenopodium quinoa HOM05D004302 ORTHO05D004939 3.0e-11 73.9 236 28.4
Duzib133G0367 Durio zibethinus HOM05D004302 ORTHO05D004939 3.0e-11 73.9 236 28.8
Duzib138G0864 Durio zibethinus HOM05D004302 ORTHO05D004939 3.0e-11 73.9 233 28.8
Gohir.A08G052000 Gossypium hirsutum HOM05D004302 ORTHO05D004939 3.0e-11 73.9 236 29.2
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 3.0e-11 73.9 236 28.8
Aa31LG11G13870 Aethionema arabicum HOM05D004302 ORTHO05D004939 3.9e-11 73.6 236 27.1
Ah.10g038290 Amaranthus hybridus HOM05D004302 ORTHO05D004939 3.9e-11 73.6 236 28.0
AagrBONN_evm.TU.Sc2ySwM_228.2355 Anthoceros agrestis HOM05D002809 ORTHO05D007546 3.9e-11 73.6 235 25.1
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 3.9e-11 73.6 233 28.8
MD09G1076600 Malus domestica HOM05D004302 ORTHO05D004939 3.9e-11 73.6 236 28.4
QL02p064995 Quercus lobata HOM05D004302 ORTHO05D004939 3.9e-11 73.6 236 28.4
Hma1.2p1_2186F.1_g316430 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 5.1e-11 73.2 236 28.8
unitig_899.g15112 Utricularia gibba HOM05D004302 ORTHO05D004939 5.1e-11 73.2 236 27.5
Gorai.004G063700 Gossypium raimondii HOM05D004302 ORTHO05D004939 6.7e-11 72.8 236 29.2
Oeu032833.1 Olea europaea HOM05D004302 ORTHO05D004939 6.7e-11 72.8 237 27.8
MSTRG.23851 Avicennia marina HOM05D004302 ORTHO05D004939 8.8e-11 72.4 233 27.0
Carub.0006s1385 Capsella rubella HOM05D004302 ORTHO05D004939 8.8e-11 72.4 237 27.0
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 8.8e-11 72.4 281 25.3
Sc11g0008910 Simmondsia chinensis HOM05D004302 ORTHO05D004939 8.8e-11 72.4 236 28.0
Ah.16g100910 Amaranthus hybridus HOM05D004302 ORTHO05D004939 1.1e-10 72.0 236 27.5
AT5G15710 Arabidopsis thaliana HOM05D004302 ORTHO05D004939 1.1e-10 72.0 237 27.0
CSS0006122 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 1.1e-10 72.0 236 27.5
Gohir.D11G166700 Gossypium hirsutum HOM05D004302 ORTHO05D004939 1.1e-10 72.0 233 27.9
Gorai.007G177800 Gossypium raimondii HOM05D004302 ORTHO05D004939 1.1e-10 72.0 233 27.9
Lalb_Chr10g0092641 Lupinus albus HOM05D004302 ORTHO05D004939 1.1e-10 72.0 233 27.5
Sp6g28420 Schrenkiella parvula HOM05D004302 ORTHO05D004939 1.1e-10 72.0 237 27.0
SMO239G0172 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 1.1e-10 72.0 274 26.6
SGA_v2.0_scaffold52G19058 Striga asiatica HOM05D004302 ORTHO05D004939 1.1e-10 72.0 236 27.5
AL6G26540 Arabidopsis lyrata HOM05D004302 ORTHO05D004939 1.5e-10 71.6 237 27.0
Thhalv10013540m.g Eutrema salsugineum HOM05D004302 ORTHO05D004939 1.5e-10 71.6 237 27.0
FvH4_6g46160 Fragaria vesca HOM05D004302 ORTHO05D004939 1.5e-10 71.6 236 27.5
FAN14G3160 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.5e-10 71.6 236 27.5
Peaxi162Scf00020g00221 Petunia axillaris HOM05D004302 ORTHO05D004939 1.5e-10 71.6 236 27.5
Pp3c11_17270 Physcomitrium patens HOM05D004302 ORTHO05D311552 1.5e-10 71.6 208 28.4
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 1.5e-10 71.6 240 27.5
Actinidia17611 Actinidia chinensis HOM05D004302 ORTHO05D004939 2.0e-10 71.2 236 28.4
CANSAT64G2833 Cannabis sativa HOM05D004302 ORTHO05D004939 2.0e-10 71.2 236 28.8
Dinv33879 Davidia involucrata HOM05D004302 ORTHO05D004939 2.0e-10 71.2 236 28.4
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 2.0e-10 71.2 234 27.8
PSO017G7124 Papaver somniferum HOM05D004302 ORTHO05D004939 2.5e-10 70.9 234 27.4
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 2.5e-10 70.9 270 27.4
Lsat_1_v5_gn_3_94961 Lactuca sativa HOM05D004302 ORTHO05D004939 3.3e-10 70.5 242 26.9
Manes.01G104600 Manihot esculenta HOM05D004302 ORTHO05D004939 3.3e-10 70.5 236 28.0
Mapoly0012s0051 Marchantia polymorpha HOM05D018443 ORTHO05D015161 3.3e-10 70.5 260 28.1
Os04g0668600 Oryza sativa ssp. japonica HOM05D004302 ORTHO05D004939 3.3e-10 70.5 240 30.0
Potri.004G112400 Populus trichocarpa HOM05D004302 ORTHO05D004939 3.3e-10 70.5 236 28.0
TWI34G1614 Tripterygium wilfordii HOM05D004302 ORTHO05D004939 3.3e-10 70.5 237 29.1
Zm00001eb433190 Zea mays HOM05D004302 ORTHO05D004939 3.3e-10 70.5 238 29.4
MSTRG.10561 Avicennia marina HOM05D004302 ORTHO05D004939 4.3e-10 70.1 233 26.2
BcaB01g05031 Brassica carinata HOM05D004302 ORTHO05D004939 4.3e-10 70.1 238 27.3
CiPaw.03G081700 Carya illinoinensis HOM05D004302 ORTHO05D004939 4.3e-10 70.1 236 27.5
MELO3C022055.2 Cucumis melo HOM05D004302 ORTHO05D004939 4.3e-10 70.1 236 27.1
ECA246G1512 Erigeron canadensis HOM05D004302 ORTHO05D004939 4.3e-10 70.1 238 27.3
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 4.3e-10 70.1 242 26.9
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 4.3e-10 70.1 270 24.1
Cfa007709 Carpinus fangiana HOM05D004302 ORTHO05D004939 5.7e-10 69.7 236 27.5
Lalb_Chr04g0258341 Lupinus albus HOM05D004302 ORTHO05D004939 5.7e-10 69.7 233 27.5
PSO478G2444 Papaver somniferum HOM05D004302 ORTHO05D004939 5.7e-10 69.7 234 27.4
ATR0691G100 Amborella trichopoda HOM05D004302 ORTHO05D004939 7.4e-10 69.3 238 28.2
A03p07310 Brassica napus HOM05D004302 ORTHO05D004939 7.4e-10 69.3 238 27.3
C03p08380 Brassica napus HOM05D004302 ORTHO05D004939 7.4e-10 69.3 238 27.3
BolC3t13345H Brassica oleracea HOM05D004302 ORTHO05D004939 7.4e-10 69.3 238 27.3
BraA03t10054Z Brassica rapa HOM05D004302 ORTHO05D004939 7.4e-10 69.3 238 27.3
Haze_14364 Corylus avellana HOM05D004302 ORTHO05D004939 7.4e-10 69.3 236 28.0
CsaV3_5G038750 Cucumis sativus L. HOM05D004302 ORTHO05D004939 7.4e-10 69.3 236 27.1
Rhsim10G0060200 Rhododendron simsii HOM05D004302 ORTHO05D004939 7.4e-10 69.3 236 28.0
Atru.chr8.608 Acer truncatum HOM05D004302 ORTHO05D004939 1.3e-09 68.6 236 28.0
Dinv34899 Davidia involucrata HOM05D004302 ORTHO05D004939 1.3e-09 68.6 236 27.1
HanXRQChr07g0200041 Helianthus annuus HOM05D004302 ORTHO05D004939 1.3e-09 68.6 241 27.4
Lj1g0002235 Lotus japonicus HOM05D004302 ORTHO05D004939 1.7e-09 68.2 233 27.0
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.7e-09 68.2 244 27.5
FAN02G3051 Fragaria x ananassa HOM05D004302 ORTHO05D004939 2.2e-09 67.8 236 25.8
FAN05G3039 Fragaria x ananassa HOM05D004302 ORTHO05D004939 2.2e-09 67.8 236 26.7
Pp3c25_9030 Physcomitrium patens HOM05D002809 ORTHO05D004939 3.7e-09 67.0 197 28.4
SMO116G0047 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 3.7e-09 67.0 132 30.3
GSVIVG01036521001 Vitis vinifera HOM05D004302 ORTHO05D004939 3.7e-09 67.0 236 26.7
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 4.8e-09 66.6 194 30.4
Nn3g17571 Nelumbo nucifera HOM05D004302 ORTHO05D004939 4.8e-09 66.6 236 25.8
SEGI_02103 Sequoiadendron giganteum HOM05D004302 ORTHO05D004939 4.8e-09 66.6 236 26.7
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 6.3e-09 66.2 249 24.9
Pp3c23_5660 Physcomitrium patens HOM05D003005 ORTHO05D317775 6.3e-09 66.2 201 29.4
Pp3c16_10660 Physcomitrium patens HOM05D002809 ORTHO05D012113 8.2e-09 65.9 197 27.9
Sed0013406 Sechium edule HOM05D004302 ORTHO05D004939 8.2e-09 65.9 237 27.0
ECA238G3553 Erigeron canadensis HOM05D004302 ORTHO05D004939 1.1e-08 65.5 233 25.3
FAN09G3470 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.1e-08 65.5 236 26.3
Sabra17G0088200 Salix brachista HOM05D004302 ORTHO05D004939 1.1e-08 65.5 236 27.1
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.4e-08 65.1 193 28.5
TAR622G0792 Trochodendron aralioides HOM05D004302 ORTHO05D004939 1.4e-08 65.1 236 26.7
Medtr7g017400 Medicago truncatula HOM05D004302 ORTHO05D004939 1.8e-08 64.7 194 29.4
Potri.017G102300 Populus trichocarpa HOM05D004302 ORTHO05D004939 1.8e-08 64.7 236 27.5
Sabra04G0072300 Salix brachista HOM05D004302 ORTHO05D004939 2.4e-08 64.3 237 27.4
MBI15_g46819_MAGBIO Magnolia biondii HOM05D004302 ORTHO05D004939 4.1e-08 63.5 236 26.7
Pp3c17_17390 Physcomitrium patens HOM05D031927 ORTHO05D026051 6.9e-08 62.8 201 25.9
DCAR_025461 Daucus carota HOM05D004302 ORTHO05D004939 9.1e-08 62.4 233 25.8
CDE06G1895 Ceratophyllum demersum HOM05D004302 ORTHO05D007546 1.2e-07 62.0 186 26.9
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 1.2e-07 62.0 341 24.3
TPR.G3302 Trifolium pratense HOM05D004302 ORTHO05D004939 1.2e-07 62.0 194 28.9
Pp3c5_4620 Physcomitrium patens HOM05D004302 ORTHO05D030462 1.5e-07 61.6 206 28.6
Mapoly0001s0123 Marchantia polymorpha HOM05D004302 ORTHO05D007631 2.6e-07 60.8 157 31.8
Psat3g208160 Pisum sativum HOM05D004302 ORTHO05D004939 4.5e-07 60.1 194 29.4
Mapoly0005s0092 Marchantia polymorpha HOM05D007753 ORTHO05D009385 7.7e-07 59.3 140 32.1
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 1.0e-06 58.9 193 30.1
Pp3c23_11450 Physcomitrium patens HOM05D003005 ORTHO05D310686 1.3e-06 58.5 201 25.9
Pp3c3_32280 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.7e-06 58.2 238 24.4
SGA_v2.0_scaffold46G17476 Striga asiatica HOM05D002809 ORTHO05D004563 2.2e-06 57.8 197 27.9
Pp3c1_27000 Physcomitrium patens HOM05D002809 ORTHO05D004563 2.9e-06 57.4 227 27.8
ATR1093G033 Amborella trichopoda HOM05D003005 ORTHO05D004170 6.5e-06 56.2 227 26.4
PSO675G0641 Papaver somniferum HOM05D000007 ORTHO05D000676 6.5e-06 56.2 233 22.7
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 6.5e-06 56.2 258 26.7


User provided reference genes

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