Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_20970 Physcomitrium patens HOM05D002320 ORTHO05D002428 5.1e-156 555.1 452 100.0
Mapoly0001s0505 Marchantia polymorpha HOM05D002320 ORTHO05D002428 1.0e-39 168.7 472 59.5
SEGI_09274 Sequoiadendron giganteum HOM05D002320 ORTHO05D002428 1.5e-22 111.7 444 55.0
GSVIVG01013279001 Vitis vinifera HOM05D002320 ORTHO05D002428 5.1e-15 86.7 76 63.2
Zm00001eb023920 Zea mays HOM05D002320 ORTHO05D002428 6.7e-15 86.3 76 63.2
Nn1g00726 Nelumbo nucifera HOM05D002320 ORTHO05D002428 1.1e-14 85.5 76 63.2
Os10g0565000 Oryza sativa ssp. japonica HOM05D002320 ORTHO05D002428 1.5e-14 85.1 76 63.2
HPP92_012972 Vanilla planifolia HOM05D002320 ORTHO05D002428 1.3e-13 82.0 76 60.5
AL6G53550 Arabidopsis lyrata HOM05D002320 ORTHO05D002428 2.8e-13 80.9 77 61.0
CDE02G1803 Ceratophyllum demersum HOM05D002320 ORTHO05D002428 4.8e-13 80.1 76 60.5
SEGI_10019 Sequoiadendron giganteum HOM05D002320 ORTHO05D002428 4.8e-13 80.1 429 50.3
Atru.chr5.85 Acer truncatum HOM05D002320 ORTHO05D002428 6.3e-13 79.7 77 61.0
Duzib138G0483 Durio zibethinus HOM05D002320 ORTHO05D002428 6.3e-13 79.7 77 62.3
CiPaw.13G023000 Carya illinoinensis HOM05D002320 ORTHO05D002428 8.2e-13 79.3 77 62.3
ATR0665G345 Amborella trichopoda HOM05D002320 ORTHO05D002428 1.4e-12 78.6 381 58.3
Nitab4.5_0000293g0110 Nicotiana tabacum HOM05D002320 ORTHO05D002428 1.4e-12 78.6 77 61.0
TWI59G1296 Tripterygium wilfordii HOM05D002320 ORTHO05D002428 1.4e-12 78.6 75 64.0
Migut.B01501 Erythranthe guttata HOM05D002320 ORTHO05D002428 2.4e-12 77.8 77 59.7
Atru.chr9.1154 Acer truncatum HOM05D002320 ORTHO05D002428 4.1e-12 77.0 74 58.1
CAN.G586.2 Capsicum annuum HOM05D002320 ORTHO05D002428 4.1e-12 77.0 77 59.7
Ca_07417_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 4.1e-12 77.0 77 58.4
Gohir.A11G074400 Gossypium hirsutum HOM05D002320 ORTHO05D002428 4.1e-12 77.0 77 62.3
Gohir.D11G079100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 4.1e-12 77.0 77 62.3
Gorai.007G084700 Gossypium raimondii HOM05D002320 ORTHO05D002428 4.1e-12 77.0 77 62.3
Lalb_Chr03g0040921 Lupinus albus HOM05D002320 ORTHO05D002428 4.1e-12 77.0 77 59.7
COL.COLO4_12365 Corchorus olitorius HOM05D002320 ORTHO05D002428 5.3e-12 76.6 77 61.0
THA.LOC104814106 Tarenaya hassleriana HOM05D002320 ORTHO05D002428 5.3e-12 76.6 77 58.4
Thecc.01G401100 Theobroma cacao HOM05D002320 ORTHO05D002428 5.3e-12 76.6 77 61.0
Gorai.008G110800 Gossypium raimondii HOM05D002320 ORTHO05D002428 6.9e-12 76.3 77 61.0
FAN08G1966 Fragaria x ananassa HOM05D002320 ORTHO05D002428 9.1e-12 75.9 76 56.6
FAN13G1732 Fragaria x ananassa HOM05D002320 ORTHO05D002428 9.1e-12 75.9 76 56.6
Lj3g0021219 Lotus japonicus HOM05D002320 ORTHO05D002428 9.1e-12 75.9 77 61.0
RcHm_v2.0_Chr1g0344931 Rosa chinensis HOM05D002320 ORTHO05D002428 9.1e-12 75.9 77 61.0
FvH4_7g09080 Fragaria vesca HOM05D002320 ORTHO05D002428 1.2e-11 75.5 77 59.7
FAN03G0444 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.2e-11 75.5 77 59.7
Glyma.07G118501 Glycine max HOM05D002320 ORTHO05D002428 1.2e-11 75.5 75 60.0
RcHm_v2.0_Chr7g0206481 Rosa chinensis HOM05D002320 ORTHO05D002428 1.2e-11 75.5 76 55.3
TWI14G0379 Tripterygium wilfordii HOM05D002320 ORTHO05D002428 1.2e-11 75.5 77 59.7
Carub.0006s3724 Capsella rubella HOM05D002320 ORTHO05D002428 1.5e-11 75.1 77 58.4
Duzib133G1189 Durio zibethinus HOM05D002320 ORTHO05D002428 1.5e-11 75.1 77 59.7
MD06G1044700 Malus domestica HOM05D002320 ORTHO05D002428 1.5e-11 75.1 76 53.9
CiPaw.11G084600 Carya illinoinensis HOM05D002320 ORTHO05D002428 2.0e-11 74.7 74 58.1
FvH4_5g20710 Fragaria vesca HOM05D002320 ORTHO05D002428 2.0e-11 74.7 76 55.3
FAN04G2023 Fragaria x ananassa HOM05D002320 ORTHO05D002428 2.0e-11 74.7 76 55.3
FAN18G0516 Fragaria x ananassa HOM05D002320 ORTHO05D002428 2.0e-11 74.7 76 55.3
TAR636G1800 Trochodendron aralioides HOM05D002320 ORTHO05D002428 2.0e-11 74.7 76 56.6
Actinidia05782 Actinidia chinensis HOM05D002320 ORTHO05D002428 2.6e-11 74.3 75 60.0
CBR_g35025 Chara braunii HOM05D002320 ORTHO05D002428 2.6e-11 74.3 73 60.3
Gorai.004G167400 Gossypium raimondii HOM05D002320 ORTHO05D002428 2.6e-11 74.3 77 59.7
Rhsim01G0141900 Rhododendron simsii HOM05D002320 ORTHO05D002428 2.6e-11 74.3 78 59.0
ECA248G1070 Erigeron canadensis HOM05D001479 ORTHO05D001401 3.4e-11 73.9 77 55.8
Glyma.01G094800 Glycine max HOM05D002320 ORTHO05D002428 3.4e-11 73.9 77 58.4
Lsat_1_v5_gn_1_83741 Lactuca sativa HOM05D002320 ORTHO05D002428 3.4e-11 73.9 77 55.8
Sabra03G0055100 Salix brachista HOM05D002320 ORTHO05D002428 3.4e-11 73.9 76 53.9
vmacro13526 Vaccinium macrocarpon HOM05D002320 ORTHO05D002428 3.4e-11 73.9 75 60.0
Actinidia21624 Actinidia chinensis HOM05D002320 ORTHO05D002428 4.5e-11 73.6 77 59.7
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 4.5e-11 73.6 77 58.4
arahy.Tifrunner.gnm1.ann1.7MRV43 Arachis hypogaea HOM05D002320 ORTHO05D002428 5.9e-11 73.2 75 60.0
arahy.Tifrunner.gnm1.ann1.PM0Q6H Arachis hypogaea HOM05D002320 ORTHO05D002428 5.9e-11 73.2 75 60.0
Glyma.03G106902 Glycine max HOM05D002320 ORTHO05D002428 5.9e-11 73.2 75 58.7
Medtr8g007500 Medicago truncatula HOM05D002320 ORTHO05D002428 5.9e-11 73.2 75 57.3
Thecc.03G237600 Theobroma cacao HOM05D002320 ORTHO05D002428 7.7e-11 72.8 76 51.3
CiPaw.12G056400 Carya illinoinensis HOM05D002320 ORTHO05D002428 1.0e-10 72.4 73 58.9
ClCG10G002090 Citrullus lanatus HOM05D002320 ORTHO05D002428 1.7e-10 71.6 76 55.3
FAN10G0730 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.7e-10 71.6 77 57.1
Peaxi162Scf00103g01214 Petunia axillaris HOM05D002320 ORTHO05D002428 1.7e-10 71.6 73 58.9
Aqoxy3G02604 Aquilegia oxysepala HOM05D002320 ORTHO05D002428 2.2e-10 71.2 76 55.3
Sabra14G0037100 Salix brachista HOM05D002320 ORTHO05D002428 2.2e-10 71.2 73 61.6
Sabra14G0039200 Salix brachista HOM05D002320 ORTHO05D002428 2.2e-10 71.2 73 61.6
ECA234G4533 Erigeron canadensis HOM05D002320 ORTHO05D002428 2.9e-10 70.9 77 54.5
Hma1.2p1_1672F.1_g296830 Hydrangea macrophylla HOM05D002320 ORTHO05D002428 2.9e-10 70.9 75 58.7
Phvul.008G138500 Phaseolus vulgaris HOM05D002320 ORTHO05D002428 2.9e-10 70.9 77 55.8
Cfa012350 Carpinus fangiana HOM05D002320 ORTHO05D002428 3.8e-10 70.5 74 52.7
Glyma.08G340800 Glycine max HOM05D002320 ORTHO05D002428 3.8e-10 70.5 77 55.8
Rhsim07G0038400 Rhododendron simsii HOM05D002320 ORTHO05D002428 3.8e-10 70.5 75 57.3
VMungo0540G1079 Vigna mungo HOM05D002320 ORTHO05D002428 5.0e-10 70.1 71 60.6
FAN10G2100 Fragaria x ananassa HOM05D002320 ORTHO05D002428 8.5e-10 69.3 73 60.3
Manes.15G170800 Manihot esculenta HOM05D002320 ORTHO05D002428 8.5e-10 69.3 76 52.6
FAN06G0692 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.1e-09 68.9 73 60.3
Nitab4.5_0006060g0020 Nicotiana tabacum HOM05D002320 ORTHO05D002428 1.1e-09 68.9 77 55.8
Sp7g17100 Schrenkiella parvula HOM05D002320 ORTHO05D002428 1.1e-09 68.9 74 51.4
Actinidia30945 Actinidia chinensis HOM05D002320 ORTHO05D002428 1.4e-09 68.6 71 60.6
Cc08_g01460 Coffea canephora HOM05D002320 ORTHO05D002428 1.4e-09 68.6 73 56.2
VMungo0331G0907 Vigna mungo HOM05D002320 ORTHO05D002428 1.4e-09 68.6 71 57.7
FAN01G0449 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.9e-09 68.2 77 55.8
DCAR_025039 Daucus carota HOM05D002320 ORTHO05D002428 2.5e-09 67.8 77 54.5
BcaNung00120 Brassica carinata HOM05D002095 ORTHO05D002058 4.2e-09 67.0 74 50.0
BcaNung00126 Brassica carinata HOM05D002320 ORTHO05D002428 4.2e-09 67.0 74 50.0
A01p20240 Brassica napus HOM05D002320 ORTHO05D002428 4.2e-09 67.0 74 50.0
C01p25380 Brassica napus HOM05D002320 ORTHO05D002428 4.2e-09 67.0 74 50.0
BolC1t02489H Brassica oleracea HOM05D002320 ORTHO05D002428 4.2e-09 67.0 74 50.0
BraA01t01949Z Brassica rapa HOM05D002320 ORTHO05D002428 4.2e-09 67.0 74 50.0
Lj2A252G54 Lonicera japonica HOM05D002320 ORTHO05D002428 4.2e-09 67.0 74 56.8
HPP92_020687 Vanilla planifolia HOM05D002320 ORTHO05D002428 4.2e-09 67.0 74 56.8
Carub.0004s1686 Capsella rubella HOM05D002320 ORTHO05D002428 5.5e-09 66.6 74 50.0
Duzib084G0140 Durio zibethinus HOM05D002320 ORTHO05D002428 5.5e-09 66.6 76 48.7
Gohir.D12G101700 Gossypium hirsutum HOM05D002320 ORTHO05D002428 5.5e-09 66.6 77 58.4
Lj4g0005880 Lotus japonicus HOM05D002320 ORTHO05D002428 5.5e-09 66.6 74 52.7
TAR375G0074 Trochodendron aralioides HOM05D002320 ORTHO05D002428 5.5e-09 66.6 76 51.3
Actinidia12636 Actinidia chinensis HOM05D002320 ORTHO05D002428 7.2e-09 66.2 71 60.6
Cpa.g.sc52.80 Carica papaya HOM05D002320 ORTHO05D002428 7.2e-09 66.2 77 53.2
AT4G17080 Arabidopsis thaliana HOM05D002320 ORTHO05D002428 9.4e-09 65.9 74 48.6
CARHR223660 Cardamine hirsuta HOM05D002320 ORTHO05D002428 9.4e-09 65.9 74 48.6
Potri.002G140000 Populus trichocarpa HOM05D002320 ORTHO05D002428 9.4e-09 65.9 77 54.5
Sabra01G0119500 Salix brachista HOM05D002320 ORTHO05D002428 9.4e-09 65.9 72 52.8
PGSC0003DMG400001833 Solanum tuberosum HOM05D002320 ORTHO05D002428 9.4e-09 65.9 74 52.7
SGA_v2.0_scaffold52G19259 Striga asiatica HOM05D002320 ORTHO05D002428 9.4e-09 65.9 77 54.5
Thhalv10024873m.g Eutrema salsugineum HOM05D002320 ORTHO05D002428 1.2e-08 65.5 74 50.0
vmacro00380 Vaccinium macrocarpon HOM05D002320 ORTHO05D002428 1.2e-08 65.5 73 54.8
BcaB04g18383 Brassica carinata HOM05D002320 ORTHO05D002428 1.6e-08 65.1 74 48.6
CAN.G572.28 Capsicum annuum HOM05D002320 ORTHO05D002428 1.6e-08 65.1 75 54.7
Gohir.A08G162000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 1.6e-08 65.1 76 48.7
Lj1g0016906 Lotus japonicus HOM05D002320 ORTHO05D002428 1.6e-08 65.1 77 53.2
A08p12860 Brassica napus HOM05D002320 ORTHO05D002428 2.1e-08 64.7 74 48.6
BraA08t33270Z Brassica rapa HOM05D002320 ORTHO05D002428 2.1e-08 64.7 74 48.6
HanXRQChr06g0167151 Helianthus annuus HOM05D002320 ORTHO05D002428 2.1e-08 64.7 75 54.7
Sabra02G0109300 Salix brachista HOM05D002320 ORTHO05D002428 2.1e-08 64.7 77 53.2
CDE11G0313 Ceratophyllum demersum HOM05D002320 ORTHO05D002428 2.7e-08 64.3 72 55.6
Thhalv10028664m.g Eutrema salsugineum HOM05D002320 ORTHO05D002428 2.7e-08 64.3 77 51.9
Gohir.D06G130300 Gossypium hirsutum HOM05D002320 ORTHO05D002428 2.7e-08 64.3 77 51.9
BolC8t48432H Brassica oleracea HOM05D002320 ORTHO05D002428 3.6e-08 63.9 74 47.3
Ciclev10023356m.g Citrus clementina HOM05D002320 ORTHO05D002428 4.7e-08 63.5 73 53.4
Glyma.17G149400 Glycine max HOM05D002320 ORTHO05D002428 4.7e-08 63.5 74 51.4
Psat3g153400 Pisum sativum HOM05D002320 ORTHO05D002428 4.7e-08 63.5 77 49.4
HanXRQChr01g0015531 Helianthus annuus HOM05D002320 ORTHO05D002428 7.9e-08 62.8 77 49.4
BcaC07g38036 Brassica carinata HOM05D002320 ORTHO05D002428 1.0e-07 62.4 74 45.9
ClCG06G008100 Citrullus lanatus HOM05D002320 ORTHO05D002428 1.0e-07 62.4 77 51.9
MELO3C020368.2 Cucumis melo HOM05D002320 ORTHO05D002428 1.0e-07 62.4 77 51.9
CsaV3_2G011090 Cucumis sativus L. HOM05D002320 ORTHO05D002428 1.0e-07 62.4 77 51.9
ECA246G4725 Erigeron canadensis HOM05D002320 ORTHO05D002428 1.0e-07 62.4 77 53.2
EL10Ac1g00731 Beta vulgaris HOM05D002320 ORTHO05D002428 1.4e-07 62.0 62 56.5
Medtr4g099180 Medicago truncatula HOM05D002320 ORTHO05D002428 2.3e-07 61.2 74 50.0
Ah.12g053850 Amaranthus hybridus HOM05D001479 ORTHO05D001401 3.0e-07 60.8 76 51.3
CARHR247980 Cardamine hirsuta HOM05D002320 ORTHO05D002428 3.0e-07 60.8 74 52.7
Oeu012025.1 Olea europaea HOM05D002320 ORTHO05D002428 3.0e-07 60.8 73 54.8
Phvul.003G226200 Phaseolus vulgaris HOM05D002320 ORTHO05D002428 3.0e-07 60.8 74 47.3
PGR042G2252 Punica granatum HOM05D002320 ORTHO05D002428 3.9e-07 60.5 77 49.4
HanXRQChr03g0089611 Helianthus annuus HOM05D002320 ORTHO05D002428 5.1e-07 60.1 76 51.3
Nitab4.5_0000590g0020 Nicotiana tabacum HOM05D002320 ORTHO05D002428 5.1e-07 60.1 56 60.7
Nitab4.5_0026409g0010 Nicotiana tabacum HOM05D002320 ORTHO05D002428 5.1e-07 60.1 56 60.7
Peaxi162Scf00715g00009 Petunia axillaris HOM05D002320 ORTHO05D002428 5.1e-07 60.1 70 52.9
Potri.014G052300 Populus trichocarpa HOM05D002320 ORTHO05D002428 8.8e-07 59.3 77 50.6
Sed0006851 Sechium edule HOM05D002320 ORTHO05D002428 8.8e-07 59.3 76 46.1
SMO203G0279 Selaginella moellendorffii HOM05D002320 ORTHO05D002428 1.1e-06 58.9 279 66.7
EL10Ac5g12226 Beta vulgaris HOM05D002320 ORTHO05D002428 1.5e-06 58.5 70 51.4
ECA240G3835 Erigeron canadensis HOM05D002320 ORTHO05D002428 1.5e-06 58.5 68 50.0
SGA_v2.0_scaffold340G49341 Striga asiatica HOM05D002320 ORTHO05D002428 1.5e-06 58.5 88 48.9
AL7G37630 Arabidopsis lyrata HOM05D002320 ORTHO05D002428 2.0e-06 58.2 74 44.6
Carub.0007s2432 Capsella rubella HOM05D002320 ORTHO05D002428 2.0e-06 58.2 74 44.6
COL.COLO4_06695 Corchorus olitorius HOM05D002320 ORTHO05D002428 2.6e-06 57.8 76 44.7
Eucgr.D02140 Eucalyptus grandis HOM05D002320 ORTHO05D002428 2.6e-06 57.8 48 64.6
Hma1.2p1_1397F.1_g280690 Hydrangea macrophylla HOM05D002320 ORTHO05D002428 2.6e-06 57.8 77 50.6
Lsat_1_v5_gn_3_15700 Lactuca sativa HOM05D002320 ORTHO05D002428 2.6e-06 57.8 73 50.7
Ca_22024_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 3.3e-06 57.4 74 47.3
HanXRQChr13g0419161 Helianthus annuus HOM05D002320 ORTHO05D002428 3.3e-06 57.4 74 48.6
MD07G1094800 Malus domestica HOM05D002320 ORTHO05D002428 3.3e-06 57.4 77 48.1
CANSAT25G2111 Cannabis sativa HOM05D002320 ORTHO05D002428 4.4e-06 57.0 77 48.1
Gohir.D08G182000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 4.4e-06 57.0 76 44.7
Gorai.004G190900 Gossypium raimondii HOM05D002320 ORTHO05D002428 4.4e-06 57.0 76 44.7
Duzib205G1043 Durio zibethinus HOM05D002320 ORTHO05D002428 5.7e-06 56.6 76 44.7
Lj7C550G3 Lonicera japonica HOM05D002320 ORTHO05D002428 5.7e-06 56.6 97 46.4
AUR62013774 Chenopodium quinoa HOM05D002320 ORTHO05D002428 7.4e-06 56.2 55 56.4
AUR62023382 Chenopodium quinoa HOM05D002320 ORTHO05D002428 7.4e-06 56.2 55 56.4
Ciclev10019866m.g Citrus clementina HOM05D002320 ORTHO05D002428 7.4e-06 56.2 77 46.8
Phvul.011G180000 Phaseolus vulgaris HOM05D002320 ORTHO05D002428 7.4e-06 56.2 73 45.2
GSVIVG01018327001 Vitis vinifera HOM05D002320 ORTHO05D002428 7.4e-06 56.2 73 49.3
unitig_0.g1334 Utricularia gibba HOM05D002320 ORTHO05D002428 9.7e-06 55.8 59 55.9


User provided reference genes

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