Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.1e-215 753.1 376 100.0
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.9e-189 665.2 376 88.0
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.6e-118 430.3 370 60.8
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.1e-111 407.5 361 59.6
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.5e-108 396.4 342 58.2
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 6.2e-107 391.7 340 56.2
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.8e-106 390.2 346 56.1
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 6.9e-106 388.3 351 54.7
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 6.9e-106 388.3 342 56.4
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 9.0e-106 387.9 342 56.4
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 4.4e-105 385.6 347 56.5
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.6e-105 384.8 343 55.4
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.7e-104 383.6 351 55.6
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.2e-104 383.3 336 56.2
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 2.2e-104 383.3 360 54.4
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 2.9e-104 382.9 342 55.3
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.9e-104 382.9 351 55.0
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 4.9e-104 382.1 343 55.1
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 4.9e-104 382.1 356 54.8
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 4.9e-104 382.1 347 55.0
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 6.4e-104 381.7 349 55.3
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.1e-103 380.9 342 55.3
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.4e-103 380.6 344 54.9
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 1.9e-103 380.2 336 55.7
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 3.2e-103 379.4 353 54.1
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.2e-103 379.4 343 54.5
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 3.2e-103 379.4 345 55.4
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.2e-103 379.4 344 55.2
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 5.4e-103 378.6 347 53.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.4e-103 378.6 343 54.5
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.4e-103 378.6 343 54.5
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.4e-103 378.6 346 54.3
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 7.1e-103 378.3 342 55.6
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 7.1e-103 378.3 342 55.0
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 9.3e-103 377.9 343 56.0
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 9.3e-103 377.9 343 56.0
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 9.3e-103 377.9 342 55.0
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 9.3e-103 377.9 342 55.0
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.2e-102 377.5 263 68.1
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 1.2e-102 377.5 335 54.9
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.2e-102 377.5 336 55.7
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.6e-102 377.1 342 55.3
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.6e-102 377.1 336 54.5
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.1e-102 376.7 346 54.0
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 2.1e-102 376.7 356 54.5
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 2.7e-102 376.3 342 55.3
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 3.5e-102 375.9 342 55.3
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 3.5e-102 375.9 342 55.3
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 3.5e-102 375.9 342 55.3
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 3.5e-102 375.9 342 55.3
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 4.6e-102 375.6 342 55.6
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 7.9e-102 374.8 342 54.7
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 7.9e-102 374.8 342 55.0
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 7.9e-102 374.8 346 54.0
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 7.9e-102 374.8 349 55.0
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.7e-101 373.6 350 53.7
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 2.3e-101 373.2 371 53.6
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 2.3e-101 373.2 344 54.9
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.3e-101 373.2 335 55.8
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.3e-101 373.2 344 54.4
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 2.3e-101 373.2 341 54.0
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.9e-101 372.5 342 54.4
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 5.1e-101 372.1 342 54.4
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.1e-100 370.9 342 53.2
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.1e-100 370.9 342 53.5
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.9e-100 370.2 360 52.5
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 2.5e-100 369.8 342 53.2
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 2.5e-100 369.8 342 52.6
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 4.3e-100 369.0 343 55.1
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 5.6e-100 368.6 342 53.5
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 7.3e-100 368.2 344 53.8
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 9.6e-100 367.9 342 53.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.6e-99 367.1 342 53.8
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 4.8e-99 365.5 342 55.8
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 6.2e-99 365.2 369 51.2
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 8.1e-99 364.8 342 54.1
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 1.1e-98 364.4 355 51.5
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 3.1e-98 362.8 343 53.9
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 5.3e-98 362.1 379 50.9
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 5.3e-98 362.1 357 50.7
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 1.2e-97 360.9 343 52.5
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 3.4e-97 359.4 347 51.6
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 4.5e-97 359.0 346 52.0
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.8e-97 358.6 357 50.1
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 7.6e-97 358.2 341 54.3
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 2.9e-96 356.3 335 53.7
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 3.8e-96 355.9 358 51.4
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 4.9e-96 355.5 342 52.9
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.9e-95 353.6 271 60.9
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 4.6e-94 349.0 370 49.5
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 1.3e-93 347.4 342 52.0
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.9e-93 345.9 325 53.8
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.1e-92 344.4 291 58.4
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.5e-92 344.0 274 59.9
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.8e-91 339.7 396 46.7
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 3.7e-91 339.3 324 53.4
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 6.2e-91 338.6 342 51.8
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 4.0e-90 335.9 274 59.1
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 5.3e-90 335.5 309 54.4
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.2e-89 334.3 301 55.8
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 2.0e-89 333.6 298 56.7
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 7.6e-89 331.6 276 57.2
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.0e-88 331.3 346 50.6
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.1e-86 323.6 327 53.2
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.5e-86 322.8 363 47.7
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 3.5e-86 322.8 298 54.7
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 3.5e-86 322.8 301 55.1
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.3e-85 320.9 304 53.3
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.0e-85 319.7 301 54.2
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 3.9e-85 319.3 245 62.0
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 6.7e-85 318.5 341 49.3
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 8.7e-85 318.2 347 50.1
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.9e-84 317.0 328 52.4
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 1.4e-82 310.8 304 52.0
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.8e-82 310.5 389 45.5
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 2.4e-82 310.1 245 60.4
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 3.1e-82 309.7 357 46.8
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.2e-81 307.8 342 47.1
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.3e-77 294.3 275 53.1
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.3e-77 293.5 348 44.8
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.0e-72 278.1 225 57.8
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.5e-68 263.5 275 49.5
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 4.5e-65 252.7 397 39.5
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 4.5e-65 252.7 258 50.8
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 1.9e-63 247.3 250 52.0
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.5e-63 246.9 257 51.0
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 9.4e-63 245.0 256 50.0
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 4.4e-60 236.1 303 47.2
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.1e-58 231.5 182 62.1
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 5.9e-57 225.7 248 49.6
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 2.2e-56 223.8 226 50.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.8e-51 206.8 247 44.9
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 7.7e-49 198.7 174 53.4
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.3e-45 187.2 231 42.4
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 4.0e-37 159.8 206 45.1
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.2e-35 154.1 159 49.1
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.5e-31 140.6 362 30.7
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 4.1e-26 123.2 132 47.7
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 3.6e-22 110.2 90 58.9
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 4.9e-19 99.8 66 65.2
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-18 97.8 65 63.1
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 4.1e-18 96.7 65 63.1
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 4.1e-18 96.7 65 63.1
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 7.0e-18 95.9 65 64.6
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 4.6e-17 93.2 63 65.1
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.7e-11 74.7 120 41.7
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 3.7e-11 73.6 119 39.5
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 6.2e-06 56.2 38 68.4


User provided reference genes

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