Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 4.0e-119 431.4 214 100.0
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 2.2e-72 276.2 208 62.5
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 2.2e-72 276.2 214 64.5
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 3.1e-71 272.3 214 63.1
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 7.0e-71 271.2 214 63.6
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 7.0e-71 271.2 214 63.6
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 7.7e-70 267.7 214 61.2
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 2.2e-69 266.2 214 61.7
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 3.8e-69 265.4 214 61.7
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 3.8e-69 265.4 214 62.1
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 5.0e-69 265.0 207 61.4
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 5.0e-69 265.0 214 61.2
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 6.5e-69 264.6 207 60.9
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.5e-68 263.5 214 63.1
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 5.5e-68 261.5 191 64.4
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.6e-67 260.0 214 62.1
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 8.0e-67 257.7 198 64.1
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.8e-66 256.5 214 59.8
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 2.6e-65 252.7 211 60.2
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 3.3e-65 252.3 211 58.3
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 7.5e-65 251.1 214 58.9
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 4.8e-64 248.4 229 53.7
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 8.2e-64 247.7 211 57.8
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.4e-63 246.9 214 60.3
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 1.7e-61 240.0 207 56.5
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 2.2e-61 239.6 215 56.3
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 3.2e-60 235.7 214 57.9
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 4.2e-60 235.3 211 56.4
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 7.2e-60 234.6 186 61.3
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 9.4e-60 234.2 211 55.0
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.2e-59 233.8 211 58.3
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.2e-59 233.8 211 58.3
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.2e-59 233.8 211 58.3
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.7e-59 232.6 214 57.0
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 2.7e-59 232.6 216 56.5
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 3.6e-59 232.3 214 55.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 3.6e-59 232.3 211 54.0
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 3.6e-59 232.3 214 55.6
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 4.7e-59 231.9 211 54.0
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 8.0e-59 231.1 194 58.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.0e-58 230.7 211 53.6
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.4e-58 230.3 204 57.4
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.4e-58 230.3 211 56.4
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 1.8e-58 229.9 217 54.4
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 1.8e-58 229.9 215 57.2
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.8e-58 229.9 211 56.9
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.3e-58 229.6 215 56.7
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.2e-57 227.3 211 55.9
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.5e-57 226.9 211 56.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 2.6e-57 226.1 211 55.0
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 3.4e-57 225.7 197 57.9
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 3.4e-57 225.7 188 56.4
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 4.4e-57 225.3 186 57.0
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 5.7e-57 224.9 203 56.2
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 9.8e-57 224.2 211 52.1
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 9.8e-57 224.2 215 53.0
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.3e-56 223.8 215 53.0
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.3e-56 223.8 215 54.4
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.3e-56 223.8 211 54.5
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 1.7e-56 223.4 214 54.7
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 1.7e-56 223.4 215 54.4
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 2.8e-56 222.6 211 54.5
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 2.8e-56 222.6 214 55.1
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.8e-56 222.6 215 54.4
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.8e-56 222.6 215 54.4
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.8e-56 222.6 215 54.4
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 2.8e-56 222.6 209 54.5
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.8e-56 222.6 211 54.5
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 2.8e-56 222.6 215 54.4
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 3.7e-56 222.2 214 54.2
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 4.8e-56 221.9 186 58.1
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 6.3e-56 221.5 207 54.6
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 8.3e-56 221.1 214 54.2
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.3e-56 221.1 215 54.0
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.1e-55 220.7 214 55.1
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.4e-55 220.3 215 53.5
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.8e-55 219.9 214 53.7
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 1.8e-55 219.9 186 57.5
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.8e-55 219.9 217 53.5
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 2.4e-55 219.5 214 53.7
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 2.4e-55 219.5 212 50.9
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 3.1e-55 219.2 186 57.5
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 3.1e-55 219.2 211 53.6
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 4.1e-55 218.8 216 53.7
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 4.1e-55 218.8 198 51.0
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.1e-55 218.8 187 57.8
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.1e-55 218.8 187 57.8
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 9.1e-55 217.6 211 53.1
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 9.1e-55 217.6 214 53.3
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.2e-54 217.2 207 54.6
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.2e-54 217.2 215 53.0
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.7e-54 216.1 205 53.7
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.7e-54 216.1 209 53.6
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 3.5e-54 215.7 207 54.6
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 3.5e-54 215.7 214 52.8
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 3.5e-54 215.7 197 53.3
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 5.9e-54 214.9 184 57.6
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 2.2e-53 213.0 214 52.8
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 6.5e-53 211.5 195 55.9
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 2.5e-52 209.5 190 55.8
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 2.5e-52 209.5 190 55.8
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 2.5e-52 209.5 190 55.8
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 5.5e-52 208.4 190 55.8
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 5.7e-49 198.4 192 54.2
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.7e-48 196.8 187 53.5
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.2e-48 196.4 239 45.6
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.2e-48 196.4 154 59.7
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.8e-47 193.4 186 52.7
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 9.2e-47 191.0 155 56.8
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.2e-43 180.6 190 50.0
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.5e-41 173.7 140 58.6
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 3.5e-38 162.5 214 44.4
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 8.9e-34 147.9 114 58.8
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 8.9e-34 147.9 201 44.3
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 9.8e-33 144.4 179 40.2
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.3e-32 144.1 113 57.5
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 4.3e-28 129.0 138 50.7
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 1.6e-27 127.1 164 41.5
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.9e-23 113.6 79 65.8
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 1.6e-19 100.5 63 65.1
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 1.4e-15 87.4 105 41.0
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 5.1e-13 79.0 78 47.4
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.1e-11 73.6 71 47.9
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 8.1e-11 71.6 91 40.7
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 5.2e-10 68.9 91 49.5
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 1.1e-07 61.2 59 47.5
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 7.8e-06 55.1 55 45.5


User provided reference genes

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