Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.7e-236 821.6 414 100.0
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.9e-202 709.1 415 87.0
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 3.9e-163 578.6 367 77.9
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 9.4e-157 557.4 347 76.4
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.8e-155 553.1 366 75.1
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 4.0e-155 552.0 381 72.2
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.0e-154 549.7 366 74.0
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.3e-154 548.9 366 73.8
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 9.7e-154 547.4 365 74.5
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 9.7e-154 547.4 370 72.7
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.7e-153 546.6 367 73.8
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.4e-152 543.5 386 71.5
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 3.1e-152 542.3 370 73.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.2e-151 540.4 379 71.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 2.0e-151 539.7 366 72.4
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.3e-150 537.0 366 71.9
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.9e-150 535.8 370 71.1
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 2.9e-150 535.8 366 73.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 5.0e-150 535.0 396 69.2
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 8.5e-150 534.3 368 72.6
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.9e-149 533.1 366 71.3
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.9e-149 533.1 363 73.3
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.5e-149 532.7 344 75.6
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 4.2e-149 531.9 355 73.2
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 4.2e-149 531.9 373 68.9
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 7.2e-149 531.2 408 66.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 7.2e-149 531.2 368 72.0
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.2e-148 530.4 347 74.1
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.6e-148 530.0 373 68.9
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 2.7e-148 529.3 369 71.3
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 4.7e-148 528.5 344 74.7
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 4.7e-148 528.5 366 71.3
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.0e-147 527.3 345 73.6
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.0e-147 527.3 369 71.3
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.4e-147 526.9 351 74.1
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 2.3e-147 526.2 355 72.1
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 3.0e-147 525.8 344 73.8
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 8.8e-147 524.2 389 67.6
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.2e-146 523.9 371 69.8
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.5e-146 523.5 346 73.1
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.5e-146 523.5 381 68.5
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.0e-146 523.1 355 73.2
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.6e-146 522.7 376 70.2
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.4e-146 522.3 387 66.4
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.4e-146 522.3 355 72.7
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 3.4e-146 522.3 362 70.7
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 5.7e-146 521.5 355 72.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 5.7e-146 521.5 365 69.6
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 5.7e-146 521.5 401 66.1
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 5.7e-146 521.5 366 68.6
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 5.7e-146 521.5 344 72.7
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 7.5e-146 521.2 352 71.3
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 7.5e-146 521.2 352 71.3
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.3e-145 520.4 366 69.1
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.3e-145 520.4 373 70.2
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.3e-145 520.4 364 70.6
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.3e-145 520.4 367 68.7
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.7e-145 520.0 373 68.9
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.2e-145 519.6 352 71.3
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 2.8e-145 519.2 353 71.1
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 3.7e-145 518.8 355 72.1
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.8e-145 518.5 369 69.6
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 4.8e-145 518.5 355 71.8
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 6.3e-145 518.1 363 69.4
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 8.3e-145 517.7 352 71.3
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.3e-145 517.7 373 67.8
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 8.3e-145 517.7 379 69.1
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.1e-144 517.3 385 66.8
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.4e-144 516.9 375 68.0
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.4e-144 516.2 362 69.3
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 2.4e-144 516.2 368 68.5
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 3.1e-144 515.8 388 67.3
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 3.1e-144 515.8 374 68.2
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 7.0e-144 514.6 364 69.2
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 7.0e-144 514.6 355 69.9
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 7.0e-144 514.6 344 72.4
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.0e-143 513.1 327 76.8
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 3.5e-143 512.3 375 69.6
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 3.5e-143 512.3 355 69.6
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 4.5e-143 511.9 352 70.5
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 4.5e-143 511.9 364 69.5
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 5.9e-143 511.5 344 71.5
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 7.7e-143 511.1 366 71.6
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 7.7e-143 511.1 344 70.9
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.3e-142 510.4 355 68.5
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.9e-142 509.2 354 70.9
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 5.0e-142 508.4 344 70.9
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 1.1e-141 507.3 344 71.8
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.5e-141 506.9 357 69.2
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.9e-141 506.5 376 68.6
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.9e-141 506.5 409 63.8
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.5e-141 506.1 353 72.0
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 5.5e-141 505.0 399 63.7
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 7.2e-141 504.6 363 68.6
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 6.1e-140 501.5 363 68.9
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-139 500.4 368 68.8
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.0e-139 499.2 356 70.2
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 6.8e-139 498.0 366 67.5
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 8.8e-139 497.7 314 76.1
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.5e-138 496.9 406 63.8
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 2.6e-138 496.1 344 70.9
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 3.4e-138 495.7 363 68.3
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 5.7e-138 495.0 355 68.5
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 9.8e-138 494.2 351 70.7
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 2.3e-134 483.0 358 66.8
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.5e-133 480.3 383 64.0
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 6.1e-132 474.9 350 65.4
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 8.0e-132 474.6 430 59.1
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 4.9e-129 465.3 349 64.5
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.4e-128 463.8 314 71.3
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.8e-128 463.4 380 62.1
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.4e-128 461.8 364 63.2
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 6.6e-126 454.9 573 46.4
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.3e-123 446.4 366 62.8
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.8e-123 444.9 355 64.5
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 8.3e-121 438.0 292 72.9
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 5.4e-120 435.3 355 64.2
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.6e-100 370.5 278 66.2
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.2e-96 355.9 363 55.6
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.2e-66 258.1 194 67.0
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.5e-61 241.1 147 75.5
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 5.3e-59 232.6 373 41.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 7.9e-55 218.8 176 58.5
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 1.1e-45 188.3 187 56.1
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.6e-45 187.2 267 44.9
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 1.8e-43 181.0 147 61.9
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 1.2e-37 161.8 112 70.5
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.1e-32 145.2 112 65.2
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.7e-28 131.3 373 28.7
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.7e-28 130.2 81 71.6
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 7.7e-26 122.5 82 72.0
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 6.5e-25 119.4 67 82.1
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.2e-13 82.0 52 71.2
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 4.9e-12 76.6 93 46.2
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.7e-09 68.2 41 68.3
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 8.9e-06 55.8 37 67.6


User provided reference genes

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