Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 3.1e-149 531.9 308 100.0
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 7.8e-124 447.6 250 86.0
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 4.7e-121 438.3 242 85.5
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.4e-120 436.8 251 83.3
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.4e-120 436.8 246 85.0
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 3.1e-120 435.6 246 84.6
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.9e-120 434.1 243 84.8
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 8.9e-120 434.1 247 83.8
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 1.2e-119 433.7 243 84.8
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-119 433.7 243 84.8
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-119 433.7 243 84.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.2e-119 433.7 247 84.2
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.2e-119 433.7 241 85.1
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 2.0e-119 433.0 238 86.1
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 2.0e-119 433.0 271 81.2
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 4.4e-119 431.8 247 84.6
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 5.8e-119 431.4 247 83.4
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 5.8e-119 431.4 243 84.0
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 7.6e-119 431.0 247 84.2
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 7.6e-119 431.0 247 84.2
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 7.6e-119 431.0 239 84.9
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 7.6e-119 431.0 247 83.8
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 9.9e-119 430.6 239 86.2
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 9.9e-119 430.6 239 84.9
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.3e-118 430.3 247 84.2
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.7e-118 429.9 240 84.2
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.7e-118 429.9 247 83.0
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.7e-118 429.9 239 85.4
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 1.7e-118 429.9 239 85.8
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.2e-118 429.5 239 84.5
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 2.2e-118 429.5 250 82.8
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 2.2e-118 429.5 247 83.4
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.2e-118 429.5 247 83.8
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.9e-118 429.1 239 84.9
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.9e-118 429.1 246 83.3
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.9e-118 429.1 246 83.3
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.9e-118 429.1 239 84.9
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.9e-118 429.1 247 83.4
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 3.8e-118 428.7 239 84.1
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.8e-118 428.7 239 84.9
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 3.8e-118 428.7 239 84.5
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 4.9e-118 428.3 239 85.4
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 4.9e-118 428.3 247 82.6
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 6.4e-118 427.9 239 84.5
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 6.4e-118 427.9 247 83.4
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 8.4e-118 427.6 239 84.9
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.4e-117 426.8 247 81.8
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.4e-117 426.8 239 84.1
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.4e-117 426.8 239 84.1
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 1.9e-117 426.4 239 83.3
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.4e-117 426.0 239 85.4
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.4e-117 426.0 243 83.1
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.2e-117 425.6 247 83.0
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.2e-117 425.6 248 83.1
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 3.2e-117 425.6 247 82.2
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 3.2e-117 425.6 239 84.5
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 4.1e-117 425.2 241 83.0
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 5.4e-117 424.9 247 83.0
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 5.4e-117 424.9 247 81.4
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 5.4e-117 424.9 247 82.6
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 5.4e-117 424.9 239 83.7
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 5.4e-117 424.9 247 82.6
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 7.1e-117 424.5 251 81.3
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 7.1e-117 424.5 251 81.3
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.2e-116 423.7 239 83.7
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.2e-116 423.7 244 82.8
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.6e-116 423.3 239 83.7
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 1.6e-116 423.3 247 83.0
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 2.1e-116 422.9 247 81.0
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.1e-116 422.9 247 81.0
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 2.1e-116 422.9 247 81.0
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.1e-116 422.9 239 84.5
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 2.1e-116 422.9 247 83.0
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 2.7e-116 422.5 244 82.4
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 3.5e-116 422.2 244 82.0
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 3.5e-116 422.2 239 83.7
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 3.5e-116 422.2 241 84.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.5e-116 422.2 238 84.5
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.6e-116 421.8 242 83.9
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 4.6e-116 421.8 247 82.2
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.0e-115 420.6 247 80.6
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.0e-115 420.6 242 83.5
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 1.3e-115 420.2 258 79.5
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.7e-115 419.9 247 81.0
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.7e-115 419.9 247 81.4
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.7e-115 419.9 245 81.2
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 1.7e-115 419.9 239 82.4
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.3e-115 419.5 247 82.2
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.0e-115 419.1 241 82.2
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 3.3e-114 415.6 259 77.6
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 5.6e-114 414.8 237 84.0
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 9.0e-112 407.5 239 81.2
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 5.8e-111 404.8 251 78.1
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 7.6e-111 404.4 221 86.9
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 5.6e-106 388.3 241 78.0
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 4.8e-105 385.2 242 75.2
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 1.1e-104 384.0 219 84.0
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.2e-103 380.6 344 59.9
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 3.4e-103 379.0 259 74.1
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 2.9e-102 375.9 247 74.5
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 1.9e-98 363.2 201 85.1
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 6.2e-89 331.6 238 66.8
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.2e-87 327.4 182 86.3
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 8.7e-83 311.2 190 80.5
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 4.5e-79 298.9 161 88.8
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.1e-77 294.3 162 86.4
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 7.9e-76 288.1 162 86.4
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 3.9e-75 285.8 180 78.9
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 6.7e-75 285.0 163 82.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-72 277.3 164 81.7
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.6e-71 273.1 164 79.3
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 2.6e-71 273.1 178 74.7
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 3.4e-71 272.7 182 74.7
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.7e-71 271.6 164 80.5
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 4.7e-68 262.3 145 87.6
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-65 253.8 213 63.4
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 1.7e-62 243.8 146 81.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-62 243.8 174 69.5
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 6.5e-62 241.9 147 78.2
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 7.2e-61 238.4 153 78.4
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.3e-59 233.4 153 77.1
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.6e-55 220.7 147 74.1
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 3.6e-52 209.5 139 74.8
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.8e-51 207.2 202 51.5
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.2e-49 200.3 151 67.5
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 1.9e-45 187.2 140 67.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 3.6e-36 156.4 93 79.6
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.8e-33 146.7 76 93.4
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.2e-31 141.4 76 89.5
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 5.2e-27 125.9 186 44.1
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.1e-24 118.2 71 78.9
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 8.6e-22 108.6 93 60.2
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 9.5e-21 105.1 57 78.9
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.3e-14 84.0 55 67.3
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 6.6e-14 82.4 55 65.5
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 4.7e-12 76.3 50 66.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 4.9e-09 66.2 45 64.4


User provided reference genes

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