Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1860.9 944 100.0
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1206.8 1014 65.2
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-280 970.3 1025 53.9
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.0e-158 565.1 515 57.7
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-147 528.1 554 52.5
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-147 528.1 554 52.5
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-140 503.8 553 50.8
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-139 501.1 549 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.4e-136 491.5 719 41.3
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.9e-126 456.8 799 36.0
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.0e-94 350.5 716 33.9
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.2e-84 318.2 730 32.6
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 3.0e-81 307.8 472 38.6
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.5e-80 304.7 471 40.3
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.5e-80 304.7 746 33.5
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.2e-79 302.4 469 42.0
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.1e-79 301.6 712 31.9
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.6e-79 300.8 472 40.3
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 3.6e-79 300.8 467 41.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 3.6e-79 300.8 472 41.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.8e-78 298.5 468 40.4
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.8e-78 298.5 467 40.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 2.3e-78 298.1 467 41.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 6.8e-78 296.6 467 41.3
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 8.9e-78 296.2 501 38.5
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 3.4e-77 294.3 466 39.7
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 4.4e-77 293.9 466 39.9
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 4.4e-77 293.9 464 40.7
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 5.8e-77 293.5 467 38.5
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 7.5e-77 293.1 470 40.0
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.3e-76 292.4 463 40.2
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.7e-76 292.0 466 39.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.7e-76 292.0 467 40.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.2e-76 291.6 465 40.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.2e-76 291.6 466 39.7
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 8.3e-76 289.7 468 39.1
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.4e-75 288.1 473 40.2
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.4e-75 288.1 465 39.1
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.4e-75 288.1 501 39.3
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.4e-75 287.0 469 39.9
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 5.4e-75 287.0 468 39.3
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 7.1e-75 286.6 467 41.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 7.1e-75 286.6 466 39.5
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 9.2e-75 286.2 466 39.5
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 9.2e-75 286.2 467 39.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.2e-74 285.8 465 38.9
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.2e-74 285.8 465 38.9
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 1.6e-74 285.4 474 39.7
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 2.1e-74 285.0 529 36.9
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 2.1e-74 285.0 465 38.9
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.1e-74 285.0 471 40.6
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.7e-74 284.6 469 39.7
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.7e-74 284.6 465 39.4
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.7e-74 284.6 462 40.5
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.7e-74 284.6 467 39.6
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 3.5e-74 284.3 474 39.7
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 4.6e-74 283.9 465 38.5
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.6e-74 283.9 466 39.1
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 4.6e-74 283.9 805 30.8
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 7.8e-74 283.1 467 39.8
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-73 282.7 465 39.4
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-73 282.3 465 38.7
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.3e-73 282.3 465 39.1
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.3e-73 282.3 467 40.0
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.3e-73 282.3 465 38.5
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-73 282.0 465 38.1
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.7e-73 282.0 474 39.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 2.3e-73 281.6 465 38.7
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 3.0e-73 281.2 465 38.1
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 3.0e-73 281.2 467 39.4
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.0e-73 281.2 467 40.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 3.0e-73 281.2 467 39.4
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 3.9e-73 280.8 465 38.9
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.9e-73 280.8 467 39.8
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 5.1e-73 280.4 465 38.3
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 5.1e-73 280.4 474 38.2
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 5.1e-73 280.4 474 39.0
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 5.1e-73 280.4 467 39.8
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.1e-73 280.4 467 39.6
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 5.1e-73 280.4 451 38.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.6e-73 280.0 467 40.0
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 8.6e-73 279.6 466 39.1
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.5e-72 278.9 467 39.2
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.5e-72 278.9 541 35.1
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.3e-72 277.7 465 39.1
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 5.6e-72 276.9 465 38.5
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 5.6e-72 276.9 468 38.9
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.2e-71 275.8 467 38.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.6e-71 275.4 464 39.0
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.1e-71 275.0 466 39.3
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 2.1e-71 275.0 467 37.9
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 4.7e-71 273.9 517 36.6
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 4.7e-71 273.9 518 36.5
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 4.7e-71 273.9 475 39.2
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 8.1e-71 273.1 467 38.3
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.1e-70 272.7 469 37.7
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.4e-70 272.3 464 39.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 4.0e-70 270.8 466 38.2
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 5.2e-70 270.4 474 37.1
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 6.8e-70 270.0 463 38.7
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 8.9e-70 269.6 546 35.9
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.2e-69 269.2 475 38.1
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.5e-69 268.9 470 38.5
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 2.6e-69 268.1 472 36.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 4.4e-69 267.3 448 39.5
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 7.6e-69 266.5 481 38.7
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 7.6e-69 266.5 546 35.7
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.7e-68 265.4 464 37.7
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.2e-68 265.0 478 36.4
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.9e-68 264.6 707 32.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.9e-68 264.6 699 31.3
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-67 262.7 416 40.4
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.9e-67 261.9 462 38.7
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.6e-66 258.8 511 35.4
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.6e-65 253.4 429 39.2
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 6.6e-65 253.4 481 36.4
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.1e-64 252.7 467 36.6
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.9e-64 251.9 462 38.1
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 5.6e-64 250.4 469 36.2
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 9.6e-64 249.6 467 37.3
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 3.6e-63 247.7 528 33.1
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.2e-61 242.7 436 37.6
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.2e-61 242.7 470 35.7
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 5.4e-59 233.8 192 54.7
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 3.5e-58 231.1 376 41.0
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 7.3e-56 223.4 258 46.9
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.4e-54 218.4 469 35.0
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 4.0e-54 217.6 462 35.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 3.8e-52 211.1 185 53.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.1e-51 209.5 459 33.6
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 7.9e-42 176.8 465 31.8
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-40 172.6 469 32.0
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.7e-31 141.4 152 45.4
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.5e-28 130.2 533 26.6
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.0e-20 106.7 370 29.5
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 6.5e-20 104.0 469 25.8
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.7e-15 89.4 70 57.1
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.5e-08 66.2 329 26.1
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 9.7e-08 63.5 92 34.8
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 1.8e-06 59.3 121 35.5
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.0e-06 57.4 53 45.3


User provided reference genes

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